[Fri Aug 26 16:52:05 2016] >Input file: TMQ8XYB2M3D.pdb >TM segments: 94-115 MAIDEN score = -0.3053 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- D99 -A104 0.516403723753958 K96 -S102 0.328910439687904 D99 -P108 0.314754768960484 S98 -A106 0.306776423466874 K96 -H109 0.306303796587177 K96 -P101 0.306146789369294 S103 -P108 0.183138666317848 R94 -P108 0.170308766993265 K96 -L110 0.167330461762272 D99 -A106 0.148478494479234 S98 -V105 0.12930844523262 K96 -P108 0.12594760672428 L97 -A104 0.11768387575204 A95 -S107 0.102513863253793 L97 -L110 0.102394164506318 A95 -Y100 0.0904269678896759 A104 -L110 0.0890697396216433 L97 -A106 0.0884895349118233 R94 -D99 0.0820470425219977 A95 -P108 0.0785177118562981 S98 -H109 0.0758097651308903 R94 -A113 0.0602172668231236 A95 -A106 0.0599908515822447 Y100 -A106 0.0534050998161693 A95 -L110 0.0526530771770473 R94 -G112 0.0472134341494552 A104 -H109 0.0429429980488328 L97 -S102 0.0274065318412574 R94 -H109 0.0230470616570465 R94 -L110 0.0188603574436685 A95 -P101 0.00817241017432813 L97 -H109 -0.0180302127104035 S107 -G112 -0.0234338759613406 A95 -G112 -0.0307994125453401 K96 -S103 -0.0449252908378583 K96 -V105 -0.0454484477791697 D99 -S107 -0.0550415281030619 K96 -A104 -0.0611281147916074 R94 -S107 -0.0642943553799282 K96 -A106 -0.0663987824149017 S102 -S107 -0.0740837546010393 R94 -Y100 -0.0746028372229532 P101 -S107 -0.0855301540304421 D99 -L110 -0.0865537742291734 L97 -V105 -0.10532592324276 P101 -A106 -0.106942493299583 S98 -S107 -0.110945317417503 Y100 -P108 -0.116059016063975 L97 -S103 -0.119450738941517 R94 -F111 -0.138835969967968 S98 -S103 -0.149700375131541 K96 -S107 -0.154039416455904 A95 -H109 -0.159831785214885 L97 -S107 -0.163120069210525 D99 -H109 -0.166423013334049 P101 -P108 -0.170604210362158 S102 -P108 -0.17128275668464 D99 -V105 -0.175145993178732 S98 -L110 -0.180746703400574 Y100 -V105 -0.220540048430261 S98 -P108 -0.243465129377124 Y100 -S107 -0.280427681454807 S98 -A104 -0.381442857437785 L97 -P108 -0.485358096367894