[Fri Aug 26 16:58:41 2016] >Input file: TMQ8XZW5M1D.pdb >TM segments: 290-300_ 303-323 MAIDEN score = 3.3642 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- C300 -D305 10 I297 -V303 1.273900628891 C296 -D305 0.40904630170288 K306 -E319 0.353729727215958 C293 -C300 0.322419379583954 K306 -R315 0.309115908804926 I297 -M304 0.301925054333035 P310 -T317 0.296200449451986 R311 -M322 0.273372814113649 R308 -A321 0.263849712016779 M307 -R320 0.244243861404396 C290 -R320 0.236038156694636 C293 -V303 0.229852732215818 M304 -R315 0.228489789581257 P310 -E319 0.223949483738076 C290 -C300 0.215087993191721 M307 -R323 0.212199987706548 D305 -R315 0.201590683295639 C296 -V303 0.201060036681309 L313 -E319 0.200020981512575 R308 -L313 0.186870213919994 K306 -R320 0.178535902686818 A295 -D305 0.171160709316723 I297 -K306 0.169430894449182 K306 -T317 0.166742548926835 C296 -M304 0.159845710438157 P310 -R320 0.152236905438075 R311 -A321 0.149891871638727 K306 -L313 0.136641941029374 M307 -I314 0.133931801112392 P310 -S318 0.133467938796314 G294 -R308 0.129637255332691 R308 -E319 0.126973001331267 D305 -S318 0.124681883258335 C290 -Y309 0.124650615564409 C293 -R308 0.121752307088368 C293 -Y309 0.116199430415796 V303 -G312 0.113880972027931 S318 -R323 0.111894279258321 M304 -Y316 0.111215719731341 R308 -R323 0.109752042774887 I314 -M322 0.103700368243937 M304 -I314 0.0914314679033055 C290 -I297 0.0901959024027204 I297 -Y309 0.0892523207727773 L313 -A321 0.0831280095523352 R311 -E319 0.0807285919494927 C296 -R308 0.0804104429534145 I291 -C296 0.0794993812498755 D305 -R320 0.0769360801505545 M304 -Y309 0.0766897574345715 V303 -R308 0.0761028743154276 A295 -M307 0.0730860249911098 C290 -P310 0.0700892994404496 Y309 -M322 0.0686990181700054 A295 -M304 0.0680729742112454 R315 -M322 0.0643610493812652 M307 -M322 0.0600971534679339 M304 -M322 0.0591946953866893 R311 -R320 0.0588849929885253 I297 -R308 0.0509197196649875 R308 -R320 0.0496499948706288 R308 -R315 0.0409979211101505 G294 -P310 0.0405831982193128 V303 -P310 0.0376481299290337 G292 -A299 0.0356093114861298 Y309 -S318 0.0299336069898275 C296 -M307 0.0261849242457308 G292 -M304 0.0252872259401995 D305 -T317 0.0241651855121066 V303 -Y309 0.0215722888167091 M307 -R315 0.0200008446338664 C300 -R311 0.0196365677331372 G292 -D305 0.0189645442626025 Y309 -R320 0.0187652908609 C290 -M307 0.0187066864951468 Y309 -R323 0.0185031770332191 G294 -M307 0.0128414716788697 C290 -R311 0.00728330043255498 R315 -R320 0.00699078720921598 I314 -A321 0.00643921683733512 C293 -D305 0.00622497393356003 C290 -A295 0.0050446857388915 G292 -K306 0.00381206610895712 D305 -G312 0.00359866948026766 G294 -M304 0.00238580958142043 M307 -T317 0.00225162627756159 A299 -M307 0.00221600588038751 M307 -S318 0.00129080304673401 M304 -P310 0.000353976049767724 L313 -S318 -0.00158580925742946 G294 -D305 -0.00276135740950956 I297 -R311 -0.00376927561028584 I297 -P310 -0.00705682624681425 K306 -R323 -0.0126318082650432 G292 -Y309 -0.0129672527807347 Y316 -R323 -0.0149762946724645 C293 -A299 -0.0165784819356951 G292 -C300 -0.0174966311040947 K306 -S318 -0.0178063048818662 G312 -R320 -0.0229287499742878 C290 -M322 -0.0234667175521737 M304 -G312 -0.0250462526375921 D298 -P310 -0.0273076485054824 I291 -M307 -0.0275874477715625 Y309 -E319 -0.0290516849411775 D305 -I314 -0.0292183276347067 I291 -D298 -0.0298709119345208 D305 -Y316 -0.0312456626021231 Y309 -Y316 -0.0326216883613259 M307 -A321 -0.0366875951439658 C293 -M307 -0.0374258367455766 Y309 -T317 -0.0376833077409972 M307 -G312 -0.0382877645415007 R311 -T317 -0.0386884937530663 R311 -R323 -0.0397260638563136 C300 -K306 -0.0403591352690249 A295 -K306 -0.0409249018213802 I291 -R308 -0.0411663314519006 T317 -M322 -0.0432523475349267 R308 -M322 -0.0443529421734681 R308 -T317 -0.045384487316511 T317 -R323 -0.0477338358387105 K306 -I314 -0.0520451251338465 R308 -I314 -0.0520611952709058 G292 -E319 -0.0536287676826039 C293 -M304 -0.0542914397343868 C300 -M307 -0.0577106287024605 G312 -A321 -0.0605416266758454 G312 -T317 -0.0606033839910518 D305 -R323 -0.061420978060017 L313 -M322 -0.0620629228572751 G294 -Y309 -0.064841860008523 I291 -Y309 -0.0682879826507905 K306 -R311 -0.0684444038333245 G292 -P310 -0.0691648622593 G292 -R308 -0.0709101060856865 R315 -R323 -0.0714105097747622 D305 -R311 -0.0757133939995797 V303 -R311 -0.0760666852878087 M307 -L313 -0.0829499232874917 G294 -R311 -0.0851308119386847 I291 -K306 -0.0880869586119388 I314 -E319 -0.08865829066522 G292 -V303 -0.0930608212037871 G312 -M322 -0.0934033932087921 D305 -E319 -0.0936845690309984 C290 -D305 -0.0969595712728388 Y309 -I314 -0.097297709804379 I291 -D305 -0.0981339803508988 Y309 -R315 -0.0982057214008093 R308 -S318 -0.0984466411052719 R311 -S318 -0.0986482518279564 V303 -R315 -0.0992887290737983 M304 -E319 -0.0994802161780761 V303 -E319 -0.100462625467551 P310 -Y316 -0.102380390715962 C293 -D298 -0.107656994413841 K306 -Y316 -0.111010836126699 Y309 -A321 -0.113128825493837 G292 -D298 -0.115960396345258 A299 -D305 -0.119204875297772 G292 -R311 -0.125488173545516 A299 -K306 -0.12687634172413 G312 -E319 -0.12861944297535 C296 -K306 -0.134302527449021 A299 -M304 -0.138208683067672 G294 -V303 -0.142267722481604 A295 -V303 -0.1446564045937 G312 -S318 -0.145012005116104 K306 -A321 -0.1496590301423 L313 -R320 -0.15225504068213 D298 -M307 -0.157743480865325 D305 -L313 -0.160914841388735 G294 -K306 -0.166432341781387 D305 -M322 -0.170919927224828 G292 -R323 -0.171042526166296 C293 -P310 -0.172009843827159 D305 -A321 -0.172557875183603 D298 -K306 -0.174845107468437 I291 -R323 -0.176244868573825 G292 -M307 -0.177548706255549 M304 -S318 -0.18161884011624 C290 -M304 -0.185569565760281 G294 -C300 -0.186909970262461 K306 -M322 -0.188046132171863 M307 -E319 -0.190138935966123 D298 -D305 -0.190882596646028 R315 -A321 -0.199581414024807 M307 -Y316 -0.199927936438422 Y316 -M322 -0.200016952854729 C290 -D298 -0.206412396187242 D298 -M304 -0.221979119748559 K306 -G312 -0.224848877943308 C290 -C296 -0.225284210746317 M304 -R311 -0.239474696530984 I291 -I297 -0.24002853062128 I314 -R320 -0.247080258902313 Y316 -A321 -0.250955237534997 C290 -K306 -0.260398246835243 G292 -I297 -0.275617527897743 R308 -Y316 -0.286879083860248 C293 -K306 -0.287539965496833 A295 -C300 -0.37219604037206 D305 -P310 -0.406958116900049 I297 -M307 -0.413395381622961 I297 -D305 -0.429168280460168 P310 -R315 -0.479160061811745 G294 -A299 -0.481754483503113 C290 -E319 -0.528151256567347 C290 -R323 -0.562708519509754 C290 -R308 -0.597231612107287 D298 -V303 -0.662701910437254 R311 -Y316 -0.681372948890221