[Mon Aug 29 17:03:43 2016] >Input file: TMQ8Y1I1M1G.pdb >TM segments: 159-176_ 192-208 MAIDEN score = -9.1723 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- M200 -F206 0.706333278298971 A171 -N207 0.646199699955573 A172 -L197 0.635318572719857 V160 -A165 0.488242926575189 Y168 -F206 0.487415502021872 V160 -R166 0.449104231850735 M200 -S205 0.447078236174825 A171 -F206 0.332203545129787 I164 -A201 0.299152745014418 T175 -P208 0.294173537679305 T173 -P208 0.290766268450116 G176 -G198 0.279731322565545 R166 -M200 0.273882034630488 A171 -P208 0.270978236725913 A172 -A201 0.268067761768513 D192 -G198 0.267467992207247 K167 -P208 0.250703465125827 M200 -N207 0.244848442990156 G198 -N207 0.23040777436055 A165 -S204 0.229776147984476 I164 -V170 0.228004672127877 Y163 -A201 0.220924120971833 A161 -S205 0.215153938624622 K167 -S204 0.206969636380147 A159 -R166 0.205635087608384 V170 -M200 0.18602876703798 R169 -N207 0.185188888932067 R169 -P208 0.177356426439672 Y168 -A201 0.176800133484225 A161 -Y168 0.173561556559052 L197 -F206 0.173451640072178 K167 -L197 0.171085967415821 A159 -A165 0.165161855285525 R169 -L197 0.160180271287791 T173 -N207 0.156452673683914 T173 -G198 0.155821349179372 Y163 -R169 0.147027420870018 T175 -G198 0.145099726243819 R166 -E203 0.144907651337404 Y168 -I196 0.141195761107705 L197 -E203 0.137620725205135 A165 -N207 0.132570764278752 Y163 -M200 0.132387012681042 Y163 -Y168 0.129551047538847 A171 -S205 0.128593929987796 Y168 -L194 0.126479662039602 A161 -S204 0.12264751576412 R169 -G176 0.120452900414284 A172 -E203 0.119826343558835 A161 -V199 0.119477140951297 A161 -R169 0.112434356906425 E162 -R169 0.110128081000566 K167 -T173 0.108203620156316 T175 -S204 0.106521485216696 A174 -A201 0.106253383991111 E203 -P208 0.104518571616327 A171 -G198 0.102991144157264 A165 -T173 0.1007828736931 A165 -A201 0.0998416361240105 T173 -A201 0.0994775560985927 G176 -A201 0.0983253220536856 V160 -G198 0.0965758618330244 T175 -A201 0.0965661727363543 D192 -L197 0.0950619414445786 Y163 -S205 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