[Fri Aug 26 17:08:54 2016] >Input file: TMQ8Y2G1M1D.pdb >TM segments: 548-565_ 572-597 MAIDEN score = -14.2021 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V561 -D573 0.993013319589989 L551 -A588 0.676700978226759 L558 -F580 0.575938847290908 L558 -V577 0.534613482009052 L558 -A581 0.52570984419585 D573 -L578 0.520092123021056 R591 -V596 0.431628979045881 L551 -R591 0.415512700841523 A562 -V577 0.396428725185274 L558 -D563 0.33463516463071 V561 -N576 0.332093827552272 V561 -V577 0.330070682721276 A562 -D573 0.315789236368678 L551 -T584 0.309672452524426 L578 -R583 0.299805713448881 R548 -D595 0.298128022524116 R555 -L560 0.281345845912893 V565 -V572 0.280938723027018 L551 -R583 0.27719423092797 D563 -V577 0.26459449043925 D549 -D595 0.247227383509476 L558 -N576 0.238378620088602 R555 -E587 0.229902957519418 L551 -T592 0.222484492656967 V565 -V577 0.213888573448399 A553 -F580 0.21195842518409 A562 -G575 0.210351259134457 E556 -V561 0.207165923765558 R555 -V577 0.200463772456568 V561 -R579 0.199388276932736 Q586 -R591 0.19900357363336 R559 -N576 0.191653702302809 A553 -R583 0.190357270514244 V565 -G575 0.174491427178293 R552 -E587 0.17335279066135 R548 -E587 0.164030663541664 D549 -T584 0.161550493454293 D549 -R583 0.159903589408901 S554 -V577 0.159710473706931 S554 -R583 0.15662287939544 A550 -E587 0.151832395372437 R548 -A594 0.150674232700638 A550 -R583 0.14721157029804 R552 -Q586 0.140007937988632 D549 -A588 0.139115714998542 S554 -F580 0.136366745180922 A550 -R591 0.136137343478214 R552 -F580 0.136077117503173 R552 -A581 0.133904150522676 D573 -A581 0.133754978836805 E556 -N576 0.130601390378253 R552 -Q557 0.127929501617316 L560 -L578 0.127005357690197 A581 -Q586 0.126503263861153 Q557 -S574 0.124140187706164 S554 -R579 0.123038224912642 R555 -F589 0.121895007338995 G575 -R583 0.118888793697493 Q557 -L578 0.117847738455354 R548 -T584 0.117295118966514 R579 -Q586 0.114149450683238 A550 -S582 0.111840983369263 S554 -F589 0.111560404914099 L551 -A581 0.107429352837054 A562 -R579 0.104661402268817 A553 -A581 0.104191984036409 L558 -S574 0.101987767477438 R555 -T584 0.0991199770484954 A550 -G590 0.0982563905906755 R548 -E556 0.0973113116660287 R548 -R555 0.0964869848941708 D549 -R591 0.0918277750307634 R548 -Q586 0.0911688030511262 S554 -L578 0.0887109573586358 Q586 -E593 0.0886783669140421 N564 -V577 0.0880992987652819 A550 -Q586 0.0873114155648571 A553 -V561 0.0866296231304728 L558 -T584 0.0865507113036976 A588 -E593 0.0862539801396602 R579 -E587 0.0858681214347445 R548 -L585 0.0858579447573017 S554 -A562 0.0852736953088229 E587 -D595 0.0841502230742275 R555 -L578 0.0839257279237956 R559 -L585 0.0823163648863759 Q557 -N576 0.0815294696080744 Q557 -N564 0.0789561123206213 R555 -S582 0.0776646514891255 Q557 -S582 0.0765986568458521 S554 -G590 0.0761891400874908 A562 -T584 0.0752940545439791 R548 -Q557 0.0751355800392832 R555 -R583 0.0738833646692754 D563 -F580 0.0736671066639738 R555 -L585 0.0725783944325347 A553 -S582 0.0718374722055284 S582 -G590 0.0716106963439955 Q557 -R583 0.0716039505060122 N564 -S574 0.071348060828623 Q586 -A594 0.0696416554043706 L558 -E587 0.0659980433064169 E556 -L585 0.065711734009684 R559 -A588 0.0648570083876329 E556 -E587 0.064418333078227 A562 -R583 0.063879685298198 A553 -L585 0.0633203435986065 R552 -R559 0.062470768108172 E556 -R579 0.062401140083451 N564 -D573 0.0591553332831944 V561 -G575 0.0583584204390757 D549 -Q557 0.0581202732923873 L558 -A588 0.0508166183468366 D563 -S574 0.0498726442924775 R559 -T584 0.0493267117162053 L551 -L585 0.0474645451156011 F589 -D595 0.0473659253707694 Q557 -D573 0.047012317683232 R548 -R591 0.046740921069419 A550 -L585 0.0454146141243781 V577 -S582 0.04375564040705 E556 -R583 0.043424490619568 A550 -F589 0.0410585558367949 L560 -T584 0.0383035235138507 R583 -A588 0.0379382415826042 S574 -R579 0.0375992159029757 Q557 -A562 0.0374083919677339 R555 -N576 0.0369981487179416 R555 -T592 0.0335546721169493 A588 -D595 0.0318458168958422 V565 -F580 0.0310412183984561 V561 -T584 0.0285912269921498 D549 -T592 0.0283159571362335 E556 -V577 0.0279123039794964 N564 -N576 0.0270057521735777 L551 -S582 0.0268210475406801 A550 -Q557 0.0259417685270797 A581 -F589 0.0250602925578218 L558 -G575 0.0227642737522302 S582 -E587 0.0209612773888104 L560 -G575 0.0204890231427179 R555 -N564 0.0191060358117405 D573 -S582 0.0180399359639204 S554 -N576 0.0143816622628129 A553 -A588 0.0118087161196364 E556 -S582 0.00940638888069634 S554 -D563 0.00905721677640611 R548 -G590 0.00855555300680955 G590 -D595 0.004494516089804 D563 -G575 0.00356422035259094 A550 -A581 -0.00194310098091144 A550 -F580 -0.00497859832327618 G575 -T584 -0.00890731233308584 Q557 -G575 -0.00946336790647129 V565 -A581 -0.00950237424291434 N576 -A581 -0.0100194529117204 A550 -R555 -0.0103190140404212 R548 -F589 -0.010401019020439 S574 -S582 -0.0117564622624609 R555 -A581 -0.0123321266235181 L578 -Q586 -0.0127179267240649 R548 -A553 -0.0128861460727054 N564 -V572 -0.0163572927862279 L585 -E593 -0.0164218648632631 S554 -R559 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