[Mon Aug 29 17:16:21 2016] >Input file: TMQ92JZ9M1G.pdb >TM segments: 442-450_ 453-462_ 510-524_ 580-622 MAIDEN score = 27.1828 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- S516 -H592 10 L597 -P606 1.96933545370408 I523 -W581 1.64701270372465 P522 -W581 1.50390253438469 I598 -K603 1.44833372789798 N447 -Y458 1.34114191395593 W515 -L593 1.18879057859256 T521 -V582 1.14360673080077 I523 -V582 1.02014428883483 R519 -V582 0.970343546067098 L444 -D462 0.88889643524302 L444 -Q461 0.873178155000804 T584 -P591 0.853725376941446 R519 -H592 0.826656809728498 P518 -H592 0.774996638796816 V513 -D605 0.772536255062116 P518 -P591 0.73115177241932 V446 -F460 0.708810653886074 T521 -W581 0.70260260096059 L444 -F460 0.686947977433588 I524 -G580 0.677124660869884 E596 -D605 0.667369582611391 V582 -L593 0.652032746236506 E442 -D605 0.643996315479467 G512 -V604 0.642336228181142 A517 -L593 0.635067527543552 T511 -V604 0.597666004450638 L607 -P612 0.596636520479007 G520 -W581 0.577648057051656 E596 -V604 0.556710556707314 G512 -P606 0.548665259054757 L597 -V604 0.535592125552192 W515 -Y595 0.529159162899949 P606 -L611 0.490408159515093 T511 -D605 0.48381968885688 D514 -H594 0.473521630623218 I598 -V604 0.460055883534924 F450 -T455 0.458144521419332 K449 -F457 0.456838237102733 T584 -H592 0.434153292282485 H510 -H592 0.405527609427484 P518 -V582 0.391431187406013 W515 -V582 0.389131889315435 R519 -L593 0.384346336993572 S516 -L593 0.383079337016564 L443 -Q461 0.382298076131372 L444 -R459 0.364319870318471 Y445 -D462 0.363885062799963 G583 -Y595 0.357770726301551 G583 -L593 0.356702471794727 G520 -V582 0.349031472191585 F450 -R456 0.348670717522912 G512 -L597 0.347273726174012 Y445 -Y458 0.344378013771081 V513 -L593 0.3399773681217 V582 -P591 0.329836630412887 E442 -P606 0.328285316054131 G614 -A621 0.325124766125125 Q461 -E620 0.324265596946547 N600 -R610 0.324059121694735 F450 -F457 0.315132684104183 G512 -K603 0.307705117457682 D462 -R608 0.299412741820578 P518 -T589 0.295748417927067 Y595 -P612 0.295672533898003 V513 -P606 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