[Mon Aug 29 17:20:07 2016] >Input file: TMQ92KP0M1G.pdb >TM segments: 62-91_ 105-121 MAIDEN score = 2.7687 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- M81 -K86 7.74377664111552 K86 -I91 0.554391536216901 R80 -I91 0.456149190006655 R80 -G85 0.445025745628522 M81 -R88 0.438431194849595 A82 -A115 0.361606484843616 M81 -I91 0.341971057784711 H76 -H89 0.338721122503238 A74 -G105 0.330272445547586 H89 -N113 0.327526442055834 A70 -A111 0.319967850596842 A74 -A111 0.314588021455565 Q77 -H89 0.310053088964308 D67 -V106 0.302812254187256 G85 -G117 0.285178806688409 G66 -G105 0.272925538271021 A78 -G117 0.259130097311215 M81 -N113 0.256833945025321 Q77 -N90 0.242756414533874 R88 -I114 0.234417101455078 G85 -N90 0.232055609189808 G66 -V72 0.216689437776899 A70 -G105 0.216113178923402 A74 -H89 0.205611052378767 H89 -I114 0.199620886498757 H89 -V116 0.194866276993101 A78 -I114 0.194207597651202 M75 -V116 0.193296841562368 H76 -E112 0.185402390809398 H76 -M81 0.183350051398498 A79 -I91 0.182129305193953 A73 -T107 0.182035643461938 M81 -M87 0.167046059284244 D67 -T107 0.157467736933151 A74 -E112 0.156198103754185 A82 -R88 0.155560459642039 M75 -N113 0.154865660283105 A74 -R88 0.149553952277898 A84 -H89 0.147523864542233 I91 -E112 0.147166223545432 Q77 -G85 0.146669005050848 A73 -H89 0.145716920534579 A79 -H89 0.144931614706703 R80 -E112 0.142127347389898 L64 -S71 0.140461005894585 S71 -A111 0.139534573937774 S83 -V116 0.135181638202768 M87 -I114 0.13501240251286 A70 -N113 0.134172580885126 V69 -H76 0.133530696218505 V106 -A111 0.133408373970037 G66 -A111 0.132145716170363 M87 -V116 0.129198785413069 A79 -R88 0.125476843264347 A73 -N113 0.120853367397299 S83 -A115 0.116912755633836 V72 -T107 0.113132124300547 S83 -I91 0.112721834661627 R80 -R88 0.109927839762022 N90 -I114 0.108763691873741 G66 -A73 0.106613107756635 R80 -N113 0.102934239586072 A73 -A111 0.102499188305034 A70 -A78 0.1019252218462 S65 -A111 0.101618577263666 A74 -A82 0.0976933222094201 S71 -A121 0.0941564925856821 S71 -A110 0.0926452248586331 K86 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