[Mon Aug 29 17:23:25 2016] >Input file: TMQ92M50M1G.pdb >TM segments: 112-118_ 121-127 MAIDEN score = 1.0384 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V116 -W123 0.74352473115417 L118 -W123 0.605772290790988 R113 -S124 0.49464008539593 V116 -V125 0.432624804142016 R115 -V125 0.400180658928182 G114 -E126 0.385339638363281 G114 -V125 0.319768557307128 G114 -S124 0.296144214062613 V116 -G127 0.214028926798374 G112 -E126 0.199140716029579 R113 -W123 0.162547187180257 V116 -S124 0.158653147358324 R113 -E126 0.142003048381329 R113 -G127 0.124269142695777 R115 -T122 0.120633174095368 R113 -T122 0.0670856648462566 G112 -V125 0.0451951341064447 R115 -E126 0.028416802438028 R117 -G127 -0.0135372512875422 V116 -T122 -0.0198503064608708 V116 -T121 -0.0388771572112381 G114 -T121 -0.0496243711147929 R113 -V125 -0.0528400570984058 V116 -E126 -0.0565589340030366 G114 -W123 -0.058016018851732 G114 -T122 -0.0746505146220722 R115 -T121 -0.0759209360602515 R117 -S124 -0.0890789606308071 L118 -E126 -0.110998801147614 R117 -E126 -0.132090271839948 G112 -S124 -0.137224452934968 G112 -W123 -0.143560895787084 R117 -V125 -0.145733642965906 G114 -G127 -0.187536294112151 R115 -G127 -0.205364609042852 L118 -V125 -0.230855159464045 R115 -W123 -0.270227740965612 R117 -T122 -0.316213679431585 L118 -S124 -0.337174555466957 R117 -W123 -0.33751142698902 G112 -G127 -0.353992876740476 R115 -S124 -0.464097821847622