[Fri Aug 26 17:32:44 2016] >Input file: TMQ92N44M1D.pdb >TM segments: 240-259 MAIDEN score = 9.1006 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Q240 -I245 10 A241 -F246 0.375926066795886 V252 -A258 0.123050323318044 Q240 -F249 0.120055389383911 M251 -V259 0.10388960442055 M251 -M257 0.0657132632712164 A241 -V247 0.0596711429147492 H250 -E255 0.053546067920532 M251 -A258 0.010033214670687 Q240 -D248 -0.00463351198603146 Q240 -V247 -0.0147397388920067 M251 -A256 -0.0564672430711739 G242 -V247 -0.0639755251465504 V252 -V259 -0.0903722272380354 P254 -V259 -0.12373200335822 H250 -V259 -0.127654282028764 A241 -D248 -0.171352566523355 V253 -A258 -0.259271846351075 Q240 -F246 -0.269904724456184 V252 -M257 -0.281275800679212 V253 -V259 -0.347871246240099