[Fri Aug 26 17:33:01 2016] >Input file: TMQ92N80M1D.pdb >TM segments: 323-339 MAIDEN score = -0.0515 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- S324 -R329 0.276109675421668 D325 -L330 0.152180145722892 M327 -A332 0.148004686992395 R329 -A334 0.14176244986955 D325 -A331 0.134849539141228 L330 -L336 0.121723427390098 S324 -L330 0.108361032495612 A332 -G338 0.106534945729534 L326 -A332 0.0832153132585121 L323 -R329 0.0702561507981536 A331 -K339 0.0664336213031298 A332 -Y337 0.0595111525983318 L323 -L330 0.0445097128130882 A331 -Y337 0.0347268394652964 L323 -A328 0.0324635983000796 A331 -L336 -0.00890647174945602 A328 -A334 -0.0103058114647743 L330 -E335 -0.0146167592870303 S324 -A331 -0.0299105324232967 A328 -E333 -0.0469374191099829 E333 -K339 -0.0595696919376567 M327 -A334 -0.0616081893531071 A328 -E335 -0.0966089061757032 R329 -E335 -0.105890655612689 M327 -E333 -0.119375293114949 E333 -G338 -0.138032595537765 A332 -K339 -0.158892052806411 D325 -A332 -0.161328059262663 L326 -A331 -0.194235933134974 L330 -K339 -0.206116566893201 A334 -K339 -0.219813270305669