[Fri Aug 26 17:34:42 2016] >Input file: TMQ92NS0M1D.pdb >TM segments: 47-64_ 68-91_ 96-113 MAIDEN score = -8.2560 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I90 -V104 1.19142770898726 L71 -K76 1.12918842703648 Y72 -A81 1.11609395432252 K89 -A103 1.02333411548828 L75 -G80 0.743155472787342 K89 -V104 0.67703514651711 G79 -V84 0.668304180625487 Y72 -L83 0.627197681765709 I90 -A101 0.616760483510816 Y72 -G79 0.58040799783622 F108 -A113 0.5642876378055 A74 -Y82 0.507671887594618 L71 -Y82 0.506658058917992 I90 -N102 0.496284183784186 P105 -Q110 0.396558508118491 K89 -P105 0.396550199792099 L96 -A101 0.390903835361587 W85 -M106 0.377695834884419 L75 -A81 0.363060661975118 E98 -P105 0.363003504092448 T73 -A81 0.35974499713582 L71 -A81 0.338448647288482 W88 -P105 0.326028651210428 T73 -L83 0.322379915688309 K89 -Q110 0.29858033771117 A74 -L83 0.284957783776052 A74 -A81 0.267834637171509 K89 -A111 0.266645409974537 W88 -V104 0.264006958120513 Y72 -G80 0.260092272749491 I90 -R100 0.257650966531155 G91 -R100 0.24819799783651 A74 -G79 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