[Fri Aug 26 16:55:12 2016] >Input file: TMQ9H1E5M1D.pdb >TM segments: 37-65 MAIDEN score = -1.4901 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- M42 -W47 1.0352958877383 V50 -W55 0.799850796020377 P41 -K58 0.443724513013165 P41 -N46 0.373873973136194 P41 -W55 0.323414233049991 P41 -T48 0.288876868280247 V39 -Y60 0.250471122429478 R38 -M56 0.248268005935842 T48 -E54 0.229556432923274 Q40 -E54 0.220059736791289 Q40 -N46 0.214532122241406 V39 -L57 0.210626285770326 T43 -L57 0.19845003764785 Q40 -K58 0.196048851165411 P41 -L49 0.192853897306163 T43 -T48 0.174532179782597 L49 -E54 0.172565881635159 S37 -M56 0.171709672822019 T43 -K58 0.149039883762873 R38 -W55 0.148212875445444 T48 -W55 0.145826679291744 N46 -E52 0.144060163909784 V39 -V50 0.142727516681896 S45 -E52 0.139547539776837 N46 -E54 0.138901409193316 Q40 -L57 0.132990759270343 T43 -E52 0.0981271564667301 L49 -L57 0.0922963432689607 N46 -W55 0.0847144147414416 Q40 -Y60 0.0759747394340273 Q40 -F59 0.0731699361976865 Q40 -G53 0.0677853024328088 W47 -K58 0.0613713600246872 Q40 -T48 0.0581277755529195 A44 -L57 0.0566193326856648 M42 -M56 0.056059501454266 P41 -V50 0.0560203099324592 W47 -E52 0.0544086868016165 A44 -M51 0.0497085917854205 T48 -G53 0.048389775865274 N46 -M56 0.0455126104212749 V50 -K58 0.0450952529925461 A44 -V50 0.0436624395109706 M42 -M51 0.0415546329657432 T43 -M56 0.0414772767995405 W47 -G53 0.0310216239125376 P41 -F59 0.0290321008313137 E52 -L57 0.0269677556879193 T48 -M56 0.0252793154368511 V39 -N46 0.0227915499322915 Q40 -W47 0.0213270216665171 L49 -M56 0.00647859083418112 K58 -C64 0.00478358767148102 M42 -A61 0.00162550211482149 S45 -L57 -0.000948414969075384 R38 -E54 -0.00380035642662513 T43 -M51 -0.00770224113979046 V39 -F59 -0.0123980572396785 Q40 -S45 -0.0125616230627292 T43 -Y60 -0.0127760835417585 T43 -F59 -0.0137363229812255 A44 -F59 -0.0188534990907998 N46 -L57 -0.0210006391047566 M42 -T48 -0.0236123768517915 Q40 -E52 -0.028567122665986 T43 -W55 -0.0363714839987483 R38 -K58 -0.0373955329771216 M51 -M56 -0.0412888917076319 P41 -Y60 -0.0429589186677903 W47 -F59 -0.0450722760487112 S45 -M51 -0.0458518087867834 S37 -L57 -0.0468707931300623 M42 -Y60 -0.0470312382444877 Q40 -L49 -0.0519460164469807 P41 -W47 -0.058838758798307 T48 -L57 -0.0612607815444473 P41 -A61 -0.0637443095975476 W47 -E54 -0.0648544949560055 V39 -E54 -0.069309431275566 P41 -M51 -0.0750149381753658 V39 -M56 -0.0770415812095262 K58 -P65 -0.0799207452849009 P41 -M56 -0.0824462029418629 N46 -K58 -0.0948286083101676 Q40 -M51 -0.0965659852370599 V39 -L49 -0.104870730907101 M51 -L57 -0.108196462479642 N46 -G53 -0.120442653677294 Q40 -W55 -0.129729592246389 Q40 -V50 -0.131699771834557 F59 -C64 -0.133985831118348 A44 -K58 -0.135014100935554 V50 -F59 -0.140894244117711 R38 -L57 -0.142638597168197 M42 -K58 -0.151006115075454 M42 -F59 -0.15550334944114 W47 -M56 -0.161709545808305 F59 -P65 -0.165394099201091 N46 -M51 -0.166649837516422 S37 -M42 -0.176860197554242 M42 -E52 -0.180995042863354 T43 -V50 -0.185480318633673 M42 -E54 -0.189912378864329 Y60 -P65 -0.194767776968714 M42 -G53 -0.205182201417595 M42 -V50 -0.209144413321757 V39 -W47 -0.210681683891379 A44 -L49 -0.222748073437868 V39 -K58 -0.245504597576578 W47 -L57 -0.247042816136757 L49 -W55 -0.248136061614162 S45 -V50 -0.253105750553574 W47 -W55 -0.257746767331819 P41 -E54 -0.277290397644223 V50 -L57 -0.277419835961092 V50 -M56 -0.282099371271398 T43 -L49 -0.31009093901763 M42 -L49 -0.326492166988404 Q40 -M56 -0.328257225050971 M42 -W55 -0.352829149180057 M42 -L57 -0.369916621716234 V39 -W55 -0.375693473650191 P41 -L57 -0.44582544491043