[Fri Aug 26 17:01:28 2016] >Input file: TMQ9HD43S2D.pdb >TM segments: A372-394 MAIDEN score = 1.9323 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- N387A-H393A 1.33402665940239 P386A-N391A 0.37184994483557 N387A-L392A 0.232402723263611 P386A-L392A 0.222468292049113 T379A-T384A 0.172562169722499 A385A-H393A 0.148814023620619 V389A-M394A 0.148186700733564 A385A-L392A 0.116200701401111 A382A-N387A 0.106507474267729 N381A-N387A 0.0978776041256174 T383A-R390A 0.0949168322099229 A385A-R390A 0.072517523665196 P388A-H393A 0.07098675747697 A385A-N391A 0.0665208791055623 T384A-V389A 0.0437731731810702 P386A-H393A 0.00650671032735639 T383A-P388A -0.0216720770953511 A385A-M394A -0.0261657463811371 T384A-R390A -0.0357320120452317 A382A-V389A -0.0379685895344197 P386A-M394A -0.0380229677634798 T383A-N391A -0.0676679233188819 N381A-P388A -0.0890567586883009 T384A-N391A -0.0994604987216969 T383A-H393A -0.109931695676332 T384A-H393A -0.121509640812197 N387A-M394A -0.148323826424309 P388A-M394A -0.150981611030145 A382A-P388A -0.172171359926209 T383A-V389A -0.255196693897746