[Mon Aug 29 17:13:33 2016] >Input file: TMQ9I6Y2S2G.pdb >TM segments: B45-61 MAIDEN score = -5.0331 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Y52B-W59B 0.152327053714033 H48B-R54B 0.147278969469843 R45B-A53B 0.144935817362144 A49B-A57B 0.11092881376142 R54B-R60B 0.109359705559515 A51B-E56B 0.0836913750018682 P46B-R54B 0.0828744543862561 E50B-A55B 0.0794371118310737 R45B-R54B 0.0649388889777089 A51B-W59B 0.0643613717718265 A55B-R60B 0.0567213989736399 H48B-A57B 0.0530172158608213 R45B-E50B 0.0394159846129059 A49B-R54B 0.0368643002743583 R45B-Y52B 0.0368393755292765 Y52B-R60B 0.0306940526383848 A47B-A55B 0.0232410766986342 R54B-W59B 0.00274073447427825 E50B-L58B -0.0116623666291194 P46B-A55B -0.0122853748036196 A53B-L61B -0.0355603095207817 A47B-E56B -0.0656316002301365 E50B-W59B -0.102482308702696 E56B-L61B -0.106457114734642 H48B-A55B -0.120248042566111 R54B-L61B -0.128172117882938 A53B-W59B -0.130674627248907 Y52B-L61B -0.13535669523147 E50B-E56B -0.14320360669212 H48B-E56B -0.151442486094532 A49B-L58B -0.163998701664968 P46B-A53B -0.174824652862865 A47B-R54B -0.184016613331623 A51B-R60B -0.192308024497465 R45B-A51B -0.193112512825249 P46B-Y52B -0.193744930767429 A47B-Y52B -0.19973275444111 Y52B-L58B -0.223548046316744 A51B-A57B -0.23674438629636 A49B-A55B -0.242210476230159 A53B-R60B -0.244863897773015 A47B-A53B -0.247464645636895 A51B-L58B -0.261368994085165 A53B-L58B -0.286751112750547 A49B-E56B -0.29706281225707 E50B-A57B -0.298849569292387 A55B-L61B -0.309103199206561 Y52B-A57B -0.333859192668944 P46B-A51B -0.426425021383274 H48B-A53B -0.499588531845273