[Fri Aug 26 17:34:50 2016] >Input file: TMQ9NV12M1D.pdb >TM segments: 85-136 MAIDEN score = 6.2130 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V87 -C106 2.67051353199706 Y88 -C106 1.44931376221738 L85 -Q105 1.04230565723678 F96 -V117 0.985568447426067 L126 -L133 0.882711891548688 A97 -E110 0.828669548849758 A97 -R114 0.777499496171076 L101 -E110 0.761164496551346 L126 -L135 0.758661061865593 L120 -L127 0.718870257246688 Y88 -L103 0.680842037646541 A97 -L102 0.67779813518759 P98 -R114 0.673420891868844 L95 -L131 0.672735607738987 L120 -A128 0.643227626254199 V87 -A104 0.552884948814683 V125 -L135 0.552742549211976 L126 -F134 0.543929226998428 L131 -S136 0.501659714695379 L85 -S108 0.486122663162099 L85 -C106 0.485586316416863 V117 -A128 0.4765454089216 V117 -L127 0.463416351510948 S90 -L102 0.447184688707516 G130 -S136 0.402599659263914 L85 -N107 0.38432473754329 L126 -L131 0.376722468518357 A97 -W113 0.372400048566995 T94 -L102 0.371264618968622 L127 -G132 0.369101426098291 P98 -S108 0.36563355936941 L120 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