[Mon Aug 29 17:52:16 2016] >Input file: TMQ9RAG5M1G.pdb >TM segments: 25-36 MAIDEN score = -0.9952 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- K27 -K33 0.334406492412187 P29 -T34 0.181977117325861 P25 -K33 0.12551457133974 T26 -V35 0.0990810229296404 P29 -P36 0.0867841214705098 K27 -T34 0.07967208528874 S28 -V35 0.0762670346820906 T26 -V32 0.0449652574693832 E30 -V35 0.019286917220158 P25 -V32 -0.0146796160496034 P29 -V35 -0.0508249950877859 K27 -P36 -0.0512417789052986 T26 -T34 -0.0575880108668985 T26 -Y31 -0.0697125397778717 S28 -K33 -0.0814671148674533 P25 -Y31 -0.151544445337299 S28 -P36 -0.169293338117877 K27 -V32 -0.182083379914431 K27 -V35 -0.194858080734743 S28 -T34 -0.234921589286107 T26 -K33 -0.238303727225899 P25 -T34 -0.255589543224328 P25 -E30 -0.291041381524066