[Fri Aug 26 17:59:50 2016] >Input file: TMQ9RFS0M1D.pdb >TM segments: 25-36 MAIDEN score = -0.5512 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- K27 -K33 0.407940720648472 P29 -P36 0.345060686260283 P29 -T34 0.171788755162024 S28 -V35 0.137448024877778 S28 -P36 0.106128053271245 Q30 -V35 0.0961105203393535 S25 -T34 0.0844987677535245 T26 -V32 0.045152838800143 S25 -K33 0.000811518715576831 S28 -K33 0.000350782039209907 K27 -T34 -0.0289735244705307 S25 -Q30 -0.0654485456456623 S25 -F31 -0.0664273655738664 P29 -V35 -0.0689900195742115 T26 -T34 -0.091742505919135 K27 -V35 -0.206669998297639 K27 -V32 -0.224620367388099 S28 -T34 -0.242043213100098 S25 -V32 -0.24291533356153 T26 -K33 -0.267211401743997 T26 -F31 -0.441474633950691