[Mon Aug 29 16:40:42 2016] >Input file: TMQ9VF81M1G.pdb >TM segments: 545-557 MAIDEN score = 0.8360 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Y549 -L555 0.675958000305335 Y549 -Y556 0.505257449020243 M552 -L557 0.403135384259511 Y550 -L555 0.281022367118306 N551 -L557 0.221342887645052 C548 -L557 0.153068835454331 N551 -Y556 0.122717703081838 A546 -G553 0.115962397256821 C548 -L555 0.112502322182024 Y550 -Y556 0.109505218270498 V547 -L557 0.100334705021932 A546 -N551 0.097977817940174 V547 -L555 0.0855249198095915 V547 -G553 0.0803765405849033 F545 -L555 0.0774447030073704 A546 -L557 0.0724071377980877 A546 -M552 0.0445623361639513 C548 -G553 0.0165253122208091 A546 -N554 -0.00454930501457283 F545 -Y556 -0.0171023704708926 V547 -M552 -0.0682749561813052 Y550 -L557 -0.0729133074479851 V547 -N554 -0.108369940692288 A546 -Y556 -0.111558961327661 F545 -Y550 -0.158150023225021 A546 -L555 -0.167101277580198 Y549 -L557 -0.167385284239001 C548 -Y556 -0.223635291826215 F545 -N551 -0.230165200043362 C548 -N554 -0.27592063862538 V547 -Y556 -0.339292412711524 Y549 -N554 -0.49515774832101