[Mon Aug 29 16:40:52 2016] >Input file: TMQ9VF81S10G.pdb >TM segments: A426-441_A561-576 MAIDEN score = -6.7397 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- R561A-L566A 0.320553184149089 A565A-Q570A 0.307298145601762 E430A-Q438A 0.286758057491588 Q431A-A436A 0.286444970211255 N428A-S435A 0.261265677733107 E564A-W569A 0.255869959105386 L432A-P441A 0.229802057346994 Q570A-N576A 0.205930518807069 W426A-K434A 0.143587875950848 Y562A-W569A 0.140940445689387 N428A-A436A 0.133411590431878 R561A-W569A 0.133115337376393 E564A-A572A 0.118273239850081 A436A-P441A 0.11091966274082 R561A-Q570A 0.109773650337258 Q570A-L575A 0.103914553824213 Y562A-Q570A 0.0941364362019463 K434A-V439A 0.0914126809901039 L566A-L575A 0.0905047234495395 A563A-H571A 0.0871706171740358 L566A-A574A 0.0866109989552097 Q431A-P441A 0.0645922020961853 A563A-Q570A 0.0525238271256273 K434A-P441A 0.0496559642607766 Q431A-V439A 0.0447528972470685 E429A-K434A 0.0371242833082648 L427A-S435A 0.0316458998222509 L427A-L437A 0.0268138678151564 H568A-V573A 0.0131539565892602 H567A-L575A 0.00945148011968135 A565A-A574A 0.000121396816985531 A565A-V573A -0.00512412491457104 E429A-L437A -0.00985679378525545 A565A-H571A -0.01905751881492 H568A-A574A -0.0190702470301938 E429A-Q438A -0.0196947626065088 H568A-N576A -0.030611834782829 W426A-S435A -0.0347381753015015 E429A-S435A -0.0417150986867907 Y562A-H571A -0.0464879042989814 W569A-N576A -0.0469892785064962 S435A-P441A -0.0543363790869922 F433A-C440A -0.0543610239141994 A563A-A572A -0.0619023489659081 E564A-H571A -0.0700526780676177 L427A-A436A -0.0765650778190343 H567A-A574A -0.0776222377419815 F433A-P441A -0.0789135975407835 L566A-V573A -0.0860999555030215 N428A-F433A -0.0898385513697555 W426A-Q431A -0.0925184743718117 E564A-Q570A -0.0938026845290562 N428A-K434A -0.0946805294204824 E430A-V439A -0.101699726788093 Q431A-L437A -0.108546817753901 W569A-A574A -0.116576867332007 A563A-W569A -0.117786264429536 L432A-C440A -0.119465275474475 H571A-N576A -0.122206954505678 E430A-S435A -0.133584743757107 E430A-A436A -0.139658460698662 H568A-L575A -0.143242844684709 Q431A-Q438A -0.157339712562471 L432A-V439A -0.162324521156412 L432A-L437A -0.16338884877549 W426A-F433A -0.166496225317595 L566A-A572A -0.16786927612838 N428A-L437A -0.175369560279709 E564A-V573A -0.187337099370443 S435A-C440A -0.18765550657359 A565A-A572A -0.188957566897613 L427A-F433A -0.193816532696443 H567A-N576A -0.194056356287085 Q431A-C440A -0.201104513851891 E430A-L437A -0.210210874888179 K434A-C440A -0.217582226613803 L427A-K434A -0.222894880952869 Y562A-H568A -0.22504611760056 R561A-H567A -0.246701112675611 R561A-H568A -0.254227210297714 L427A-L432A -0.265996964536729 E429A-A436A -0.289362859590413 E430A-P441A -0.291780447460592 W426A-L432A -0.292214716801747 H567A-V573A -0.300498853722728 W569A-L575A -0.327190731817187 F433A-V439A -0.328317754438591 L566A-H571A -0.392690613573766 F433A-Q438A -0.403587732182758 Y562A-H567A -0.432640959719839 L432A-Q438A -0.489032275951551 H567A-A572A -0.51218788959082 A563A-H568A -0.512577722816155