[Fri Aug 26 16:28:24 2016] >Input file: TMQ9VF81S9D.pdb >TM segments: A560-576 MAIDEN score = -3.7945 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- R561A-L566A 0.272748150280581 Q570A-N576A 0.242018972800619 E564A-W569A 0.197295692870755 E564A-A572A 0.175294781030202 R561A-W569A 0.155830483208562 A563A-H571A 0.151127848578777 R561A-Q570A 0.0765672885082291 Q570A-L575A 0.0666895547699478 Y562A-W569A 0.0649529520326553 A563A-Q570A 0.0479965801933842 K560A-W569A 0.039723878718136 A565A-Q570A 0.0378240232707148 A563A-A572A 0.0237259373643015 H567A-L575A 0.014347972050295 H568A-V573A -0.00248273872190441 H568A-L575A -0.00260858300016942 K560A-A565A -0.00644215825887517 H567A-A574A -0.0078734479673459 A565A-V573A -0.0148006131940952 H568A-A574A -0.0235050748389387 L566A-L575A -0.0254200311849271 E564A-H571A -0.0317078781481621 W569A-N576A -0.0338811559716428 Y562A-Q570A -0.0431705912987848 Y562A-H571A -0.0483990311296993 K560A-H567A -0.0745715564544671 W569A-A574A -0.0764072916245073 A565A-A574A -0.0772486917443773 Y562A-A572A -0.0791800655731423 E564A-Q570A -0.0813842961233171 H568A-N576A -0.0861510525389595 K560A-H568A -0.0927190665160038 L566A-A574A -0.0937012246859186 A565A-H571A -0.118080862788495 A563A-W569A -0.119582428161782 H571A-N576A -0.121721307963053 A565A-A572A -0.131722256815054 L566A-N576A -0.151028272606746 E564A-V573A -0.17191282197207 R561A-H567A -0.173480423760238 K560A-L566A -0.177676477364771 H567A-N576A -0.187845848220611 L566A-V573A -0.197965610469034 R561A-H568A -0.234427814400574 Y562A-H568A -0.250952374281713 W569A-L575A -0.278866579371033 A563A-H568A -0.28742119128133 L566A-A572A -0.302424809904311 Y562A-H567A -0.308004280920249 H567A-V573A -0.33255136821173 L566A-H571A -0.415861483202722 H567A-A572A -0.497478650540719