[Mon Aug 29 16:56:14 2016] >Input file: TMQ9Y698M1G.pdb >TM segments: 176-187 MAIDEN score = -0.9846 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Y176 -Y181 0.136110220536815 W178 -S186 0.119140490916377 G177 -G183 0.0873003194868009 G177 -S186 0.0711894492968033 G177 -A184 0.0502106439786574 Y176 -G183 0.0393390905978812 W178 -F187 0.0298217666508043 F180 -L185 0.0254555409048516 G177 -L185 0.0226106098431851 S179 -F187 0.0115252007909297 G177 -F182 -0.0133869664045561 Y181 -S186 -0.0248544119506313 S179 -A184 -0.0321368863931957 Y181 -F187 -0.0399982819308109 Y176 -F182 -0.045083070522228 W178 -G183 -0.0909541453354312 S179 -S186 -0.133470652909687 W178 -L185 -0.147301076434598 F180 -F187 -0.154064260067329 F180 -S186 -0.193358216524024 F182 -F187 -0.223975232664356 W178 -A184 -0.235103776283849 S179 -L185 -0.243663705840298