[Mon Aug 29 16:57:17 2016] >Input file: TMQ9Z138S4G.pdb >TM segments: A336-348 MAIDEN score = 2.4406 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Q343A-H348A 1.43981530297091 Q338A-H344A 0.767680178361722 Q338A-P345A 0.644921168832832 W340A-P345A 0.353852546971459 Q338A-H346A 0.340026533088504 P339A-H348A 0.233290166041711 C337A-L342A 0.18805424506853 P339A-H346A 0.181633280499987 C337A-P345A 0.165103372398717 Q336A-H344A 0.135375301523402 Q336A-H346A 0.106667250969554 C337A-S347A 0.103484100291336 C337A-Q343A 0.0928568459375927 A341A-H346A 0.0848123115751189 Q336A-P345A 0.0568826158646036 Q336A-L342A 0.0335720687744621 C337A-H348A 0.0198685884662346 P339A-H344A -0.02355975181797 A341A-H348A -0.0551660320509653 Q338A-Q343A -0.0613175632201087 Q338A-H348A -0.0743150747649151 Q338A-S347A -0.102985069878218 W340A-H348A -0.106244756384147 C337A-H344A -0.111863727372397 L342A-H348A -0.119792170188006 C337A-H346A -0.136730943450435 L342A-S347A -0.178021230372167 A341A-S347A -0.201075989021517 P339A-S347A -0.218517765686444 W340A-H346A -0.24565106156985 W340A-S347A -0.270626772117883 P339A-P345A -0.601428380420022