[Mon Aug 29 17:02:57 2016] >Input file: TMR0HVX4M1G.pdb >TM segments: 320-326_ 394-417 MAIDEN score = -5.3450 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- T394 -T399 0.641835920392531 A406 -V411 0.441254037577053 A405 -V411 0.378140463252929 A406 -E412 0.272120683091753 D325 -V402 0.253188353940751 L400 -A405 0.225942920742292 T399 -T413 0.225779726174999 T399 -E407 0.216298681425782 A405 -F414 0.210897042303056 V402 -E407 0.204131951594075 L403 -E412 0.201572048166978 A408 -T413 0.192027773928385 D325 -T394 0.174055379223819 A404 -T413 0.168592001521144 D325 -N401 0.154989923635659 L403 -V411 0.150122596113265 N401 -E412 0.124817726174411 N395 -L400 0.115607835365637 N401 -N410 0.104449124928894 A404 -F414 0.100542002026743 L403 -V409 0.0982867210870975 L400 -V411 0.0956816200619055 L403 -V415 0.0935602344812994 D325 -N395 0.0915562754031378 N401 -F414 0.0844064020741948 L324 -F414 0.0727166292645123 V402 -T413 0.0679301322998911 G398 -A406 0.0580254446180444 R326 -T394 0.0565016454778076 L324 -A405 0.0522111472147131 R326 -G398 0.0501922464831548 A406 -V415 0.0397361075429563 I322 -V402 0.0386890908781874 T394 -L403 0.036824103952694 R326 -T399 0.0333785406640419 T394 -N401 0.0305155539922319 T394 -A404 0.0124498156891848 M323 -F414 0.00751296873310592 L400 -T413 0.0054063401271589 L324 -G398 0.00300012134688377 L321 -T413 0.0029991255662819 N401 -V409 0.00142390968656292 T399 -N416 -0.00111948542112117 A404 -V411 -0.00394918407550593 N395 -A404 -0.00426206626952019 L321 -F414 -0.00568476218865221 N395 -N401 -0.009801940666752 N401 -A406 -0.0137547136655858 E407 -F414 -0.0186702575366935 T399 -A408 -0.0200966459607002 L397 -A405 -0.0242823179845555 L400 -A408 -0.0247171310574528 T399 -F414 -0.0249842945233905 V396 -A404 -0.0270197121509259 N401 -V411 -0.0333858235264106 R326 -N395 -0.0348161726943559 L400 -V415 -0.0359703322518721 L400 -F414 -0.0361320641247991 V409 -F414 -0.040418206082721 D325 -G398 -0.040609789366354 D325 -T399 -0.0480313814298734 V396 -A405 -0.0570296167671125 E407 -T413 -0.062449202939109 E407 -E412 -0.0645447369426173 L324 -N401 -0.0659273674062781 T399 -V415 -0.0660837299916817 N395 -L403 -0.0673377120235088 L403 -N416 -0.0673786538607342 G398 -L403 -0.0710094315618317 G398 -E407 -0.072392629232652 G398 -A405 -0.0740196471643442 V402 -F414 -0.0778134896698894 V402 -N410 -0.0795267046531083 L400 -V409 -0.0810971201768877 V402 -V415 -0.0835718906146388 N401 -E407 -0.0838052931806201 L324 -T399 -0.0861841184397241 A404 -E412 -0.0888331892670036 A404 -N410 -0.0902554152284044 N401 -A408 -0.0906636436481646 L400 -E407 -0.0926687135273934 L397 -A406 -0.0936840393369307 A408 -F414 -0.0975373448114381 A405 -T413 -0.0987846612990748 V402 -N416 -0.102924283781893 L324 -T394 -0.103232351052938 G398 -F414 -0.105618985041563 V396 -L403 -0.114375243794971 R326 -V402 -0.11489007752124 T394 -V402 -0.119470029660404 E407 -V415 -0.119773611641793 L321 -E412 -0.124047172098045 T399 -E412 -0.12489325956307 N401 -T413 -0.125006205013043 L403 -N410 -0.128251694411905 L324 -V402 -0.134876086316407 T399 -A406 -0.135250514609623 T399 -V411 -0.135674200624786 I322 -F414 -0.13941888257812 N395 -V402 -0.141585192136434 L400 -A406 -0.144633331509858 V396 -N401 -0.148465949621933 A405 -E412 -0.149644815433061 L400 -E412 -0.159529584521885 I322 -E412 -0.159905807585916 A405 -N410 -0.160190863398769 M323 -V402 -0.161257257567588 T399 -A405 -0.163663343442614 L397 -A404 -0.169581838223217 V402 -E412 -0.192757225954388 G398 -A404 -0.216546630323369 L403 -T413 -0.256591269971342 L403 -F414 -0.262549813530798 L403 -A408 -0.283179868526478 T394 -L400 -0.292399654855306 V402 -A408 -0.301703271259207 A406 -T413 -0.327912679102845 V396 -V402 -0.347341690671469 V402 -V409 -0.350147192573801 V402 -V411 -0.350711899389833 T399 -A404 -0.363247239388349 L397 -L403 -0.388226657226779 L397 -V402 -0.439288345201788 A404 -V409 -0.452640391270196 A406 -F414 -0.462687950251757