[Mon Aug 29 17:11:52 2016] >Input file: TMR4MIZ9M1G.pdb >TM segments: 91-110_ 167-182 MAIDEN score = -6.1764 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Y97 -Q181 0.459815083637064 A105 -L110 0.344744681445235 A173 -F178 0.197416539807769 L167 -G177 0.163285732602184 Q168 -G177 0.162371490803621 Y97 -V180 0.153524506814954 G92 -T100 0.141866008918518 Q168 -L174 0.138841481353821 L175 -V180 0.127835290805127 L93 -M101 0.1204423400387 A94 -S102 0.119304001275641 T100 -G109 0.11903799190903 L93 -T100 0.1171787398013 A94 -S103 0.114651969055537 L171 -V176 0.112519583698628 A94 -A179 0.110862573592958 V169 -A179 0.108832171087996 L99 -I108 0.10468734002579 L167 -V176 0.0995178320325962 L171 -V180 0.0992731456836482 Q168 -V180 0.0978272270317238 L93 -V180 0.0970743003108669 A94 -V180 0.0941738606292617 L95 -A105 0.0935878174231934 A94 -M101 0.0886757021669746 V104 -G109 0.0804509840258252 L167 -V180 0.0769068866865128 M101 -L110 0.0764866322690709 L167 -F178 0.0764460286685471 Y97 -A179 0.0762279899013132 L170 -V176 0.0761302055175517 L95 -S103 0.0758313632361771 V172 -G177 0.0698552426458949 T100 -G107 0.0692125389565423 V172 -F178 0.0650445758945946 A94 -G182 0.0567120165243931 Q168 -V176 0.0551206230011152 A96 -L167 0.0549787433426232 Q168 -A179 0.0510764883227627 S102 -L110 0.049674185759685 A96 -A179 0.0462815020198336 G91 -L99 0.0447234769571614 L171 -G177 0.0390520818648774 G92 -A179 0.0384802494253789 V169 -L175 0.0370886977709084 L170 -A179 0.0333178021994396 F98 -L106 0.0328498972676263 S103 -L110 0.0299877232270578 L99 -G109 0.028470949715159 Y97 -V104 0.028462119073942 L170 -G177 0.0202010900191723 Y97 -A105 0.0123438639669048 A96 -V104 0.0100981013977286 M101 -G109 0.00591883312432351 L93 -G177 0.00192880376700355 F98 -I108 -0.00311104319824995 L167 -L174 -0.00423985328838494 L99 -G107 -0.010744468865987 A96 -A105 -0.0151666395189327 V176 -G182 -0.019354758464138 V176 -Q181 -0.0225648409103824 S103 -I108 -0.0227285546166485 V172 -A179 -0.023153587009018 G91 -F98 -0.0235692282221134 V169 -V176 -0.034155008308848 Q168 -A173 -0.0350268663625624 L99 -A105 -0.0376117246385106 L167 -L175 -0.0391806009653144 G92 -M101 -0.039701705504668 G92 -S102 -0.0443905603385277 A94 -Q181 -0.0447809782685109 L93 -G182 -0.0461107542536014 G177 -G182 -0.0493833729506186 F98 -G107 -0.0520101322956503 L174 -A179 -0.059754457999047 G91 -A179 -0.0601258234239364 L93 -Q181 -0.0660239262052399 G91 -Y97 -0.0679365101822678 A173 -A179 -0.0761043682713114 L93 -F178 -0.0807130488584544 L171 -A179 -0.0814833517015972 F98 -G109 -0.0819250574180286 L99 -V104 -0.0821645772407251 Y97 -S102 -0.0869638309802561 A94 -T100 -0.0871074135173755 L95 -V104 -0.0876842277508159 L175 -Q181 -0.0912467199847988 G92 -L99 -0.0945150843954563 Y97 -L106 -0.0957938797343223 V169 -F178 -0.104801814720626 G92 -F98 -0.106025430210248 L174 -V180 -0.106523055584133 G92 -Y97 -0.11063915980261 M101 -G107 -0.12112198776254 A96 -M101 -0.123560168253057 G91 -A96 -0.124252901861652 F98 -A105 -0.125478482231569 S102 -G109 -0.12780385119202 S103 -G109 -0.129441797277889 Y97 -L167 -0.142472858589691 L99 -L106 -0.147010492783552 L93 -F98 -0.147618829158756 T100 -I108 -0.147723390345456 M101 -I108 -0.152191983721016 T100 -A105 -0.156430142684293 L170 -F178 -0.160595558596809 A96 -S103 -0.174795286898693 S102 -G107 -0.177630467610705 M101 -L106 -0.178028910295591 A94 -L99 -0.184965914797111 L93 -S102 -0.186154453814667 L93 -A179 -0.197330229223334 L170 -L175 -0.209332980785851 A96 -S102 -0.226026436593117 F98 -S103 -0.231429548851113 T100 -L106 -0.241769457381751 Y97 -S103 -0.256139651867619 L167 -A179 -0.273703159822463 L167 -A173 -0.273837222570886 L167 -V172 -0.301997497799515 L171 -F178 -0.311779868450474 L95 -S102 -0.322629574855282 L95 -T100 -0.331742221934424 Q168 -L175 -0.340371873928159 S102 -I108 -0.346166952149189 F98 -V104 -0.368118680707969 V104 -L110 -0.392423559326859 Q168 -F178 -0.399241978845235 V169 -L174 -0.404354119959027 L95 -M101 -0.425777811241352 L93 -L99 -0.427129884142056