[Fri Aug 26 17:23:35 2016] >Input file: TMS7NNX9M1D.pdb >TM segments: 599-615 MAIDEN score = -3.5944 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- E603 -K609 0.367779873062766 S606 -K614 0.313865750196525 Y608 -Q613 0.258179245030118 E602 -V607 0.235713598687556 Y601 -K609 0.222233816759175 E603 -Y608 0.201136951014238 E603 -A611 0.190664722601144 S606 -M615 0.188098968736245 H600 -Y608 0.164833132561585 E602 -E610 0.149457616627625 G599 -L605 0.135458442248538 H600 -V607 0.130288860177609 A604 -K609 0.127232431431921 Y601 -Y608 0.0847520914733342 G599 -V607 0.0838605853725499 L605 -M615 0.0596214456400863 V607 -M615 0.0274529289476315 L605 -Q613 0.0229636082796043 H600 -K609 0.0210582957761183 G599 -S606 0.0117603692286439 K609 -M615 0.0114548994565271 A604 -I612 -0.0128134620989244 E602 -A611 -0.032230323840877 Y601 -S606 -0.0373783860658339 E602 -K609 -0.0596975500429719 H600 -S606 -0.0711810803992288 A604 -Q613 -0.0927049373920976 G599 -Y608 -0.0951200613389602 L605 -E610 -0.104261866775702 Y601 -E610 -0.118775869893878 A604 -E610 -0.127547842616812 S606 -Q613 -0.129185245503775 V607 -K614 -0.141985472762584 E603 -I612 -0.15177332216283 Y608 -M615 -0.179308457729751 Y608 -K614 -0.190360498719001 L605 -K614 -0.200602451685243 A604 -A611 -0.2008433731398 E610 -M615 -0.203595280568984 E602 -Y608 -0.203806081011875 E603 -E610 -0.216176598494631 L605 -A611 -0.304148808334982 L605 -I612 -0.331298181530026 S606 -I612 -0.351820316244996 K609 -K614 -0.382655708287789 Y601 -V607 -0.386399009118484 H600 -L605 -0.398413380925829 V607 -Q613 -0.461984692665162 G599 -A604 -0.471107796263128 S606 -A611 -0.471871327377073 V607 -I612 -0.473187921814414