[Fri Aug 26 17:24:07 2016] >Input file: TMS7P1X5M1D.pdb >TM segments: 555-596 MAIDEN score = -14.1169 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V563 -D568 0.914517198151835 V563 -F569 0.858492210285203 L559 -L576 0.734322513009435 V563 -W573 0.671510260133742 N581 -A588 0.646248555651663 F569 -A596 0.598675649981403 Q580 -A589 0.583192265355184 I578 -R585 0.56833819151279 A555 -V579 0.561075099534223 A562 -F569 0.557041876589009 A570 -T595 0.505360129508598 S560 -L576 0.502406376542632 W573 -Y593 0.48056379218487 M574 -S592 0.470364308263791 L559 -W573 0.435797347472531 V579 -A589 0.407618053981492 A562 -P567 0.357044530641558 V563 -Y593 0.357040702823825 L576 -A589 0.356126521201765 L576 -S592 0.341092336086099 A571 -A596 0.337203023151288 E556 -Q564 0.333947971394792 V579 -R585 0.327693216755956 A555 -G577 0.32745547209763 P567 -S592 0.319787212487112 L559 -N575 0.300911190551259 I578 -A589 0.291953370102259 E557 -Q580 0.27983695417088 N575 -E587 0.274810880920955 G577 -A588 0.258743105369915 S560 -Q580 0.256497087305008 E557 -L576 0.23987459990863 P567 -Y593 0.22640857499917 K584 -S592 0.225670419578062 R585 -Y593 0.223918469827574 N575 -S582 0.195658740691881 D568 -A596 0.194139826028517 N575 -L583 0.192977260664292 N581 -R594 0.192308534367458 N575 -R594 0.191672217196465 V579 -H591 0.185889009411766 M574 -A596 0.183595153539791 L559 -V579 0.182247684860024 M574 -T595 0.18205792336969 S560 -A572 0.178830093148632 L561 -Q566 0.178597361675608 A571 -R594 0.175425284252324 S560 -G577 0.174855924828018 L576 -K584 0.174312783720361 S560 -A571 0.171333460180076 N575 -Q580 0.165201658532977 L559 -Q564 0.163569662109239 E587 -T595 0.16246459958606 N575 -T595 0.161222049922646 V579 -E590 0.160785053109596 L559 -P567 0.159921796108707 V563 -L576 0.158046173303515 L558 -G577 0.157311592147222 G577 -E590 0.153235567476874 E556 -A589 0.141516770177008 L576 -Y593 0.13701392127111 W573 -N581 0.135288063208956 F569 -R594 0.132840291247744 P567 -T595 0.131863876262065 A572 -Q580 0.129938536872517 A572 -A596 0.129220940659356 E557 -G577 0.127260969623061 N575 -A588 0.126305524411592 A570 -A589 0.124000232730732 A570 -H591 0.123862998507826 L559 -Y593 0.121926268739168 L558 -V579 0.121691188747461 A572 -R594 0.121231988123105 Q580 -H591 0.120795948427489 A571 -V579 0.120231548752018 Q580 -R594 0.117357218482126 V563 -A572 0.117081136199193 L561 -M574 0.115892856325885 A555 -A571 0.115434686169674 Q580 -F586 0.114635506603265 L558 -W573 0.113592851146781 I578 -K584 0.113557790258547 Q564 -F569 0.112308225251627 A588 -A596 0.112025274051658 V563 -S592 0.109785827474484 Q564 -S592 0.109069491880103 M574 -A588 0.10752553640897 A571 -A589 0.106019030725127 A555 -V563 0.105036173022363 Q564 -A571 0.101433372613566 L559 -S592 0.10098609995247 A562 -A572 0.100649572324568 A572 -A589 0.098540653430303 I578 -H591 0.0983006957661301 L561 -A571 0.0982930374369162 L559 -A596 0.0951679310327245 A562 -M574 0.0951424156268388 L559 -L583 0.0938970290508698 R585 -R594 0.091879213768117 A570 -A596 0.0906747047121907 I578 -T595 0.0902195592137547 Q566 -T595 0.0899987243732028 Q566 -A596 0.0876810256267693 K584 -H591 0.0836296024338292 S560 -T595 0.0825602101126567 E557 -Q564 0.0792103337049279 E557 -A562 0.0778802964296452 R585 -S592 0.0752628725027182 A562 -I578 0.0750077932198521 A555 -M574 0.0749525464531371 A562 -G577 0.0749370691151245 N581 -H591 0.0735513956027951 A555 -N581 0.0730636966941622 I565 -A571 0.0726162228736094 L576 -R594 0.0713029288852329 L558 -M574 0.0706865447091498 K584 -A589 0.0704397872844478 A572 -H591 0.0697629527201871 V563 -T595 0.0684682774915978 L558 -I578 0.0674261574797832 A562 -A596 0.0648837076815227 V579 -T595 0.063833789840201 M574 -E590 0.0634338583614196 V579 -Y593 0.060323661988618 Q564 -A570 0.0576100328287092 S560 -S592 0.0552391588041428 A555 -A589 0.0548670509457838 L576 -R585 0.0540192513457085 P567 -R594 0.0533681021653716 D568 -S592 0.0516493960775469 I578 -Y593 0.0508620322932316 S582 -Y593 0.0504919652067084 S560 -A570 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