[Fri Aug 26 17:24:38 2016] >Input file: TMS7TGC1M1D.pdb >TM segments: 336-357 MAIDEN score = 2.8283 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V342 -L351 0.70450615024638 G343 -S349 0.614672102352755 G341 -S349 0.552421306427522 G340 -V350 0.458514494793754 V342 -L348 0.406362584419888 G340 -S349 0.402145502417819 V342 -V350 0.370993545233783 A344 -S349 0.33126724288869 P346 -T353 0.296045721195805 A339 -A344 0.282168893913372 V342 -S349 0.257675521571074 L351 -V356 0.256517938748342 G343 -L348 0.225699189417844 G341 -F347 0.198977115412652 V342 -R352 0.179130325405175 L348 -T353 0.178158772328377 G341 -T357 0.173979421431175 G343 -R352 0.153429347349837 A344 -F354 0.152303220228191 F347 -F354 0.143516674090536 G341 -R352 0.124554932404109 P346 -L351 0.120495195397341 S349 -V356 0.119188131148612 G341 -L351 0.117870465933502 V342 -T353 0.114141270789828 G341 -P346 0.113546785183215 G343 -L351 0.11201842122725 G340 -T353 0.0982437523807246 A339 -L348 0.0951309454817161 G340 -T345 0.0910228412148584 I338 -L351 0.0889717697866255 S349 -T357 0.0859150901320185 P346 -R352 0.078630866950046 S349 -A355 0.0771365580613557 G340 -P346 0.0714673328122073 T345 -R352 0.0674645889056976 G340 -L348 0.0673685387149758 L348 -V356 0.06644210731708 A344 -T357 0.0642286192373316 F347 -T353 0.0602474631877623 V336 -G341 0.0503223546989158 G341 -F354 0.0430331812408076 I338 -V350 0.0341158033622424 I338 -A344 0.0336259035765174 A339 -T353 0.0280525369706437 G343 -A355 0.0210753386260363 G341 -L348 0.0162346789844117 G343 -V350 0.00974183654390615 A344 -V350 0.0032772072820757 T345 -V350 0.00323062709676702 A339 -T345 0.00203253907532996 V342 -F347 -0.00297839910562736 A344 -V356 -0.00628798485507387 V350 -T357 -0.00960177612024049 A339 -P346 -0.0112202234575944 G341 -V350 -0.0117866470933397 I338 -S349 -0.0191131382638305 G341 -V356 -0.0212837289313015 G341 -A355 -0.0261480194378905 V342 -T357 -0.0450430709475365 A339 -F347 -0.0483183959556257 G340 -V356 -0.0508578184227657 G341 -T353 -0.067100827704857 I338 -G343 -0.068570962125504 L348 -T357 -0.0693909456299346 A339 -V350 -0.0743374130551908 A344 -A355 -0.0778401769006005 L348 -A355 -0.0809590541338281 G340 -R352 -0.0841115257275717 V350 -A355 -0.087753735126987 T345 -F354 -0.104962808224547 T345 -L351 -0.106506711694095 A339 -R352 -0.111797105100173 G340 -F347 -0.118099095675526 V342 -F354 -0.135035678287652 L348 -F354 -0.135465067203931 F337 -V342 -0.13786497725119 A339 -L351 -0.140081614866774 A344 -L351 -0.140970385659481 A344 -T353 -0.155147347088037 R352 -T357 -0.157340097334024 G343 -V356 -0.165380739095959 F347 -R352 -0.176502211148309 A344 -R352 -0.183685806451423 G343 -T357 -0.185172378338972 S349 -F354 -0.192361860524143 V350 -V356 -0.195383482081096 A339 -S349 -0.21066926531129 L351 -T357 -0.218854935336509 G340 -L351 -0.219702361360751 V342 -A355 -0.237933379443904 G343 -F354 -0.253605754572968 V342 -V356 -0.306186766235309 G343 -T353 -0.307766265540822 T345 -T353 -0.429813670257426