[Fri Aug 26 17:35:06 2016] >Input file: TMT2NE33M1D.pdb >TM segments: 595-615_ 621-658 MAIDEN score = 7.7078 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I645 -P651 10 K601 -K625 1.17856694944181 I645 -L652 1.1075611758496 D624 -L629 0.893822862264914 F641 -S657 0.80119255496046 V598 -S627 0.775685497607824 A636 -F641 0.675366697240591 V598 -W626 0.569765267920797 F641 -Y658 0.566674265754593 L596 -S627 0.548407170161274 A644 -Y656 0.523921795506134 V643 -S655 0.494114316408485 L629 -F634 0.469977004643422 A636 -S657 0.464271291682146 M597 -S627 0.460779263686884 P603 -K625 0.444709878550019 F641 -Y656 0.439283762187916 Q630 -Y656 0.424756751183477 I645 -S653 0.404113473661079 Q630 -G635 0.37983770444511 Q639 -Y658 0.367006523777174 M597 -K625 0.358124742195326 A638 -S657 0.345350954543856 F641 -S655 0.345197050293118 Y628 -K633 0.345177059414179 D599 -Y628 0.335654782009891 A644 -S653 0.316734415472748 Q630 -A636 0.307797461499818 Q630 -K650 0.305409610037365 G623 -L629 0.297521708574197 E600 -W626 0.293861692259003 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