[Fri Aug 26 17:40:47 2016] >Input file: TMU3CY08M1D.pdb >TM segments: 217-243 MAIDEN score = -4.5842 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- N233 -K241 0.418715817688822 R230 -N238 0.342981571807523 K224 -A232 0.342401574855457 L217 -K222 0.326686737477337 A232 -G239 0.325224870474776 K222 -E228 0.309003343510226 K224 -R230 0.307555828250377 Q234 -G239 0.298607185106497 K226 -Q234 0.294397900897545 N233 -R243 0.267064818009537 G231 -N238 0.265238605993316 K220 -K226 0.235914017321969 K226 -N233 0.220496393460603 Q234 -S240 0.204287131538107 K224 -E229 0.158162757659886 G231 -G239 0.137274752861586 K222 -R230 0.135421323709129 K220 -A225 0.130667732079701 K222 -L227 0.118790111102718 R219 -K226 0.115933932760423 G231 -V242 0.113614655725985 K224 -G231 0.106561709334437 A232 -N238 0.106501303937075 K226 -D235 0.0962363093829399 A232 -V242 0.0903149677198856 R230 -G239 0.089151613388384 R230 -R237 0.0873966554336567 G231 -K241 0.0864387443046094 T223 -R230 0.0822650491098744 D235 -V242 0.081921383713297 S236 -R243 0.0794499552541823 G221 -E229 0.0758823877396839 N233 -G239 0.0630378677337431 T223 -G231 0.0566473217985859 K220 -E228 0.055169258972116 A225 -N233 0.0493635205704313 E229 -S240 0.0362345529806465 A232 -R237 0.0296020577368932 E229 -R237 0.0278529544822326 L227 -D235 0.014964581746516 K226 -A232 0.00893368046570053 T223 -E228 0.00597302311791248 R219 -E228 0.00504389097132574 M218 -K224 0.000498115222014039 Q234 -R243 -0.00303360167439681 T223 -A232 -0.0179089889089461 E228 -S240 -0.0207727594537016 E229 -S236 -0.0239599682178788 K220 -E229 -0.0306338459567415 R230 -S240 -0.0355655702969044 M218 -T223 -0.0455595848036105 D235 -K241 -0.0502928338815889 Q234 -K241 -0.0531756378388542 A225 -R230 -0.058669508762546 D235 -R243 -0.0747911723707313 E228 -R237 -0.0751211126142848 E228 -S236 -0.0802630369240611 Q234 -V242 -0.0811131390985649 G231 -R243 -0.0825550257613576 E228 -D235 -0.0915302990016982 E228 -Q234 -0.0920300382678768 R219 -L227 -0.0937219782791585 G231 -R237 -0.0950203576327981 M218 -L227 -0.096590010348241 A225 -Q234 -0.100238016681463 R230 -S236 -0.100256936333346 L217 -A225 -0.101582421145792 A232 -R243 -0.105251998619821 G221 -R230 -0.110829976901821 R237 -R243 -0.115189294705662 E229 -D235 -0.117322114482257 A225 -G231 -0.122899348240884 A232 -S240 -0.124918007958812 K224 -N233 -0.125131491039834 R219 -K224 -0.126459734131336 L227 -Q234 -0.12679471920594 K222 -G231 -0.138034916674869 E228 -N233 -0.142487666620734 A225 -A232 -0.143981521218254 G231 -S240 -0.149616205923217 R230 -D235 -0.158696882487979 L227 -S236 -0.169766812171835 R219 -A225 -0.174214331783858 T223 -E229 -0.175883007560287 N233 -V242 -0.175987189748435 M218 -K226 -0.178024525421484 K222 -E229 -0.18047438390483 G221 -E228 -0.202767924398614 R230 -K241 -0.20532524669216 L217 -K224 -0.211163119142349 K220 -L227 -0.213696763542881 L227 -A232 -0.21372159691132 M218 -A225 -0.223837637829965 L227 -N233 -0.229761637051723 N233 -N238 -0.231011529495502 L217 -K226 -0.237384433728717 R230 -V242 -0.244579665142468 G231 -S236 -0.246069741199407 K226 -G231 -0.260178728313856 G221 -K226 -0.262227614243383 S236 -K241 -0.292142391995162 E229 -Q234 -0.295932133629623 G221 -L227 -0.300237884099228 L217 -T223 -0.307130218059232 N233 -S240 -0.32578187121794 A232 -K241 -0.35707109950861 S236 -V242 -0.362260552763948 D235 -S240 -0.374676632167012 R237 -V242 -0.391356735925039 N238 -R243 -0.633373689968424