[Mon Aug 29 17:47:15 2016] >Input file: TMV3KHE6M2G.pdb >TM segments: 303-316_ 365-375 MAIDEN score = -0.9272 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- A316 -A365 0.412679896120987 A316 -A368 0.203340710521717 T306 -W313 0.181959962689454 A365 -S371 0.176977859338445 S312 -S369 0.146227118902795 R308 -D315 0.145612720772205 S303 -E310 0.144226031672714 V314 -A368 0.142530419541266 P307 -W313 0.137644069256857 S312 -A373 0.124891682016846 T306 -I311 0.123780323959435 A316 -A370 0.111298034780928 A316 -S371 0.110687591344042 A368 -A373 0.109107076447879 D315 -S369 0.106868194051433 A365 -P372 0.105349610819633 R308 -V314 0.103361561933087 P307 -S312 0.0993714493227085 M305 -E310 0.0985345292643727 G309 -V314 0.0940439834150872 W313 -S369 0.0758228752195396 A316 -A366 0.0715954621994339 L367 -A373 0.0639395816180133 A366 -A373 0.0578610293514559 M305 -V375 0.0562074095834912 M305 -W313 0.0468958534446147 D315 -S371 0.0403515014122254 W313 -A365 0.0386578303227338 A365 -A373 0.0382284005565436 D315 -A365 0.0281860276718864 R308 -W313 0.00634240790221297 D315 -L367 0.00564718784731566 I304 -E310 -0.00223806867533938 A366 -P372 -0.00444803092386081 D315 -A368 -0.0129663537804405 W313 -S371 -0.0131601943285402 L367 -P372 -0.0143695678411522 W313 -A366 -0.016901981510808 S303 -I311 -0.0175360232245136 A370 -V375 -0.0240919982875978 S312 -A365 -0.0256348321529067 V314 -A370 -0.0290853645485858 V314 -S369 -0.0321621091383921 V314 -L367 -0.0390815097617327 I304 -G309 -0.0413728587560847 I304 -S312 -0.0429478432943187 V314 -A365 -0.0490745483743016 M305 -S312 -0.0494734210787022 V314 -A373 -0.0526831051892822 D315 -A366 -0.0618851639966036 W313 -A368 -0.0678789069602331 P307 -V314 -0.0743180538636727 S303 -R308 -0.0766066142236372 S369 -I374 -0.0858134586938166 S369 -V375 -0.0876488173774466 S312 -V375 -0.0905396836337551 V314 -S371 -0.110180169654672 D315 -A370 -0.114674197235662 W313 -A373 -0.118600061469133 I311 -V375 -0.121065681290575 W313 -A370 -0.12606668798445 W313 -V375 -0.131534113129285 T306 -V375 -0.133952976343994 G309 -D315 -0.140223527802507 V314 -A366 -0.175837859725553 A316 -S369 -0.21979746093439 I304 -I311 -0.22363061756824 A365 -A370 -0.245075828675954 T306 -S312 -0.284273421621809 A316 -L367 -0.317141972796927 M305 -I311 -0.365882181731839 A366 -S371 -0.495554088198915