[Mon Aug 29 18:07:59 2016] >Input file: TMX5NVJ3M1G.pdb >TM segments: 386-427_ 438-451 MAIDEN score = -5.8067 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- R414 -F419 1.32660146608131 V408 -D425 1.20078939549946 E407 -D425 0.877826175839631 I399 -D404 0.744821129088455 V408 -F426 0.706717235137599 I410 -I421 0.697410573064074 I399 -D425 0.696255512552307 L391 -D396 0.640830819476827 L395 -V423 0.634345242218249 D404 -H409 0.630952306915801 Y401 -D425 0.61955955688806 I410 -V423 0.59986015817068 S413 -F419 0.576196734198404 I399 -V408 0.560277969223192 S402 -F426 0.539681433168841 T403 -F426 0.494738358161764 R405 -F426 0.433927606557848 I410 -Q424 0.427647568380697 A398 -V423 0.395200173694543 K400 -Q424 0.373491466398301 I412 -A422 0.368500879394116 E388 -I393 0.362719458006115 N397 -R449 0.343930701836381 I412 -F419 0.343695301516634 A398 -Q424 0.340630973442237 F387 -I392 0.339391155989947 V408 -V423 0.33033545469326 I410 -A422 0.328162096844252 I412 -I421 0.327450456852451 D446 -R451 0.300648469993646 I399 -K406 0.29465891320096 Y401 -H409 0.267343642514689 L394 -V423 0.266195481206471 R414 -A422 0.263649937430295 S411 -I421 0.254705695184967 I392 -N397 0.24784006529544 Q389 -R449 0.244502136586818 I399 -R405 0.235798898304335 Y401 -F426 0.23101027820622 D396 -Y401 0.22815063207824 D396 -K406 0.226686109279317 D404 -G427 0.226244972721721 A398 -A422 0.224011129361381 K400 -R449 0.219802963608523 D396 -K447 0.21230253134235 L395 -K400 0.201356140344695 D404 -F426 0.194330087857339 D396 -R449 0.191770703840143 K400 -A450 0.191196364112233 S402 -V408 0.189373778550516 N397 -T403 0.188615644627554 I399 -G427 0.187113228454984 I392 -A450 0.179142457172867 R441 -D446 0.177995418895767 T403 -H409 0.164426094887105 L395 -G427 0.162451975918923 L395 -K406 0.161618128746992 R405 -D425 0.159043286158643 L395 -Q424 0.155679400223 A398 -E407 0.154483720181167 K406 -F426 0.14777767444399 R414 -E420 0.142023413966222 D396 -R451 0.133679443174094 I392 -K400 0.127202979185045 E388 -N397 0.126780349071395 N397 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