[Fri Aug 26 18:18:56 2016] >Input file: TMX6Q017M1D.pdb >TM segments: 608-616_ 644-670 MAIDEN score = -1.7652 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- P662 -L670 1.77037095255181 L663 -L670 1.2032005324889 P662 -P669 1.17960282183482 Y654 -F659 0.770463606112594 V615 -W644 0.689688006971153 L613 -W644 0.652289885844332 S645 -L655 0.576990467578187 Y614 -W644 0.54953762013164 L647 -F652 0.525488466343123 V615 -S645 0.503247063185782 K651 -P669 0.441851571663735 Q649 -Y660 0.415459182785755 V661 -L670 0.405771856989167 S612 -P662 0.357324495432688 Q648 -P658 0.347887942210683 Y646 -Q657 0.335692881200216 Y614 -S645 0.334931186926251 V615 -Y660 0.298586993959886 K651 -A656 0.277425012883235 Y608 -P669 0.277142869434754 V661 -P669 0.270790892496892 Q649 -Y654 0.270087002904921 Y646 -K651 0.265986904023459 D616 -Y646 0.250080089354305 K651 -K668 0.249061098624369 Y646 -A656 0.236498801540529 Q648 -P669 0.222677949327031 S612 -Q648 0.192055690342179 S645 -P658 0.18316856242695 F652 -F659 0.179247367659613 L610 -N665 0.175198885946589 K651 -L663 0.174163214191447 Q648 -P662 0.172206527970733 K651 -D664 0.166082605195995 Y660 -G667 0.160418291496757 V615 -F659 0.153859039380312 Q649 -P658 0.153791656875947 Y614 -A656 0.152302633788493 Y614 -Y654 0.143741074283122 G653 -V661 0.143010351875749 D616 -P658 0.138107689992049 F652 -Q657 0.134516515999442 D616 -A656 0.131713801361417 Y608 -N665 0.129253937857032 F652 -G667 0.125650806508419 D664 -L670 0.125276308245384 L647 -Y660 0.121909565707806 L613 -V661 0.121121311211701 V615 -V661 0.116678373710363 L613 -L655 0.116622799734798 A656 -V661 0.114773975584042 Y608 -G667 0.111091569891178 Y654 -Y660 0.110970855797625 I611 -W644 0.108894949709458 Y660 -L670 0.105004400487203 L610 -D664 0.104685900405965 L647 -L663 0.104381168945649 Q648 -L655 0.103146541242497 V609 -L670 0.101831951605683 K651 -F659 0.101630740924572 Y646 -P658 0.10108762621348 G653 -P658 0.100721832897258 I611 -Q648 0.100408084403284 S645 -Y660 0.0981940658212697 L613 -Y654 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