[Fri Aug 26 18:21:14 2016] >Input file: TMZ2EZ79M1D.pdb >TM segments: 329-344 MAIDEN score = -0.6922 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I338 -R344 0.573687741375903 S331 -G337 0.262467304171137 A335 -R341 0.227832867113842 Q336 -R341 0.180702933003089 A334 -R341 0.170528121967131 V333 -E339 0.148299099815785 S331 -E339 0.121333613023678 I332 -E339 0.102685757815745 E339 -R344 0.100757340462558 S330 -Q336 0.0988210895656216 Q336 -R344 0.0816271835446787 V333 -Q342 0.0783587695112806 V333 -R341 0.0751659231344435 L329 -A334 0.0687248843232302 I332 -G337 0.0530033746854066 A334 -Q342 0.0471130384530691 A334 -I343 0.0361209353377894 Q336 -I343 0.0307404765321184 S330 -G337 0.00963480661201244 A335 -Q342 0.00464596430810049 I332 -R340 -0.00362573657635257 A335 -I343 -0.0160570666628547 S331 -R340 -0.0449753941124325 L329 -A335 -0.0462929840056905 G337 -R344 -0.0647005558461089 V333 -I343 -0.0847275220063413 S331 -Q336 -0.0939700999623378 S331 -I338 -0.110256734172124 A334 -E339 -0.141460705848746 L329 -Q336 -0.150380187175585 V333 -R340 -0.151019137132849 A334 -R344 -0.175615678503148 S330 -A335 -0.195486975389797 V333 -I338 -0.199267506379904 A335 -R340 -0.203006152664126 A334 -R340 -0.207179247811907 G337 -Q342 -0.21850434207241 I338 -I343 -0.22833959472674 G337 -I343 -0.238443774569384 I332 -I338 -0.242825914366508 Q336 -Q342 -0.348347473301172