Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-209]:
1a12a_PU0_1-209
CI=5.79


[210-372]:
1a12a_PU0_210-372
CI=5.96


[373-401 ]:
1a12a_PU0_373-401
CI=2.04


Level 1
PU
Molecule needs Java 1.4 Structure


[1-209]:
1a12a_PU1_1-209
CI=5.79


[210-272]:
1a12a_PU1_210-272
CI=3.59


[273-372]:
1a12a_PU1_273-372
CI=6.04


[373-401 ]:
1a12a_PU1_373-401
CI=2.04


Level 2
PU
Molecule needs Java 1.4 Structure


[1-96]:
1a12a_PU2_1-96
CI=4.52


[97-209]:
1a12a_PU2_97-209
CI=4.98


[210-272]:
1a12a_PU2_210-272
CI=3.59


[273-372]:
1a12a_PU2_273-372
CI=6.04


[373-401 ]:
1a12a_PU2_373-401
CI=2.04


Level 3
PU
Molecule needs Java 1.4 Structure


[1-96]:
1a12a_PU3_1-96
CI=4.52


[97-171]:
1a12a_PU3_97-171
CI=4.98


[172-209]:
1a12a_PU3_172-209
CI=2.35


[210-272]:
1a12a_PU3_210-272
CI=3.59


[273-372]:
1a12a_PU3_273-372
CI=6.04


[373-401 ]:
1a12a_PU3_373-401
CI=2.04


Level 4
PU
Molecule needs Java 1.4 Structure


[1-96]:
1a12a_PU4_1-96
CI=4.52


[97-124]:
1a12a_PU4_97-124
CI=2.74


[125-140]:
1a12a_PU4_125-140
CI=1.84


[141-171]:
1a12a_PU4_141-171
CI=1.54


[172-209]:
1a12a_PU4_172-209
CI=2.35


[210-272]:
1a12a_PU4_210-272
CI=3.59


[273-372]:
1a12a_PU4_273-372
CI=6.04


[373-401 ]:
1a12a_PU4_373-401
CI=2.04


Level 5
PU
Molecule needs Java 1.4 Structure


[1-96]:
1a12a_PU5_1-96
CI=4.52


[97-124]:
1a12a_PU5_97-124
CI=2.74


[125-140]:
1a12a_PU5_125-140
CI=1.84


[141-171]:
1a12a_PU5_141-171
CI=1.54


[172-209]:
1a12a_PU5_172-209
CI=2.35


[210-239]:
1a12a_PU5_210-239
CI=1.97


[240-272]:
1a12a_PU5_240-272
CI=3.46


[273-372]:
1a12a_PU5_273-372
CI=6.04


[373-401 ]:
1a12a_PU5_373-401
CI=2.04


Level 6
PU
Molecule needs Java 1.4 Structure


[1-96]:
1a12a_PU6_1-96
CI=4.52


[97-124]:
1a12a_PU6_97-124
CI=2.74


[125-140]:
1a12a_PU6_125-140
CI=1.84


[141-171]:
1a12a_PU6_141-171
CI=1.54


[172-209]:
1a12a_PU6_172-209
CI=2.35


[210-239]:
1a12a_PU6_210-239
CI=1.97


[240-272]:
1a12a_PU6_240-272
CI=3.46


[273-344]:
1a12a_PU6_273-344
CI=4.88


[345-372]:
1a12a_PU6_345-372
CI=3.92


[373-401 ]:
1a12a_PU6_373-401
CI=2.04


Level 7
PU
Molecule needs Java 1.4 Structure


[1-96]:
1a12a_PU7_1-96
CI=4.52


[97-124]:
1a12a_PU7_97-124
CI=2.74


[125-140]:
1a12a_PU7_125-140
CI=1.84


[141-171]:
1a12a_PU7_141-171
CI=1.54


[172-209]:
1a12a_PU7_172-209
CI=2.35


[210-239]:
1a12a_PU7_210-239
CI=1.97


[240-272]:
1a12a_PU7_240-272
CI=3.46


[273-293]:
1a12a_PU7_273-293
CI=2.15


[294-323]:
1a12a_PU7_294-323
CI=2.90


[324-344]:
1a12a_PU7_324-344
CI=2.33


[345-372]:
1a12a_PU7_345-372
CI=3.92


[373-401 ]:
1a12a_PU7_373-401
CI=2.04


Level 8
PU
Molecule needs Java 1.4 Structure


[1-44]:
1a12a_PU8_1-44
CI=2.09


[45-96]:
1a12a_PU8_45-96
CI=3.59


[97-124]:
1a12a_PU8_97-124
CI=2.74


[125-140]:
1a12a_PU8_125-140
CI=1.84


[141-171]:
1a12a_PU8_141-171
CI=1.54


[172-209]:
1a12a_PU8_172-209
CI=2.35


[210-239]:
1a12a_PU8_210-239
CI=1.97


[240-272]:
1a12a_PU8_240-272
CI=3.46


[273-293]:
1a12a_PU8_273-293
CI=2.15


[294-323]:
1a12a_PU8_294-323
CI=2.90


[324-344]:
1a12a_PU8_324-344
CI=2.33


[345-372]:
1a12a_PU8_345-372
CI=3.92


[373-401 ]:
1a12a_PU8_373-401
CI=2.04


Level 9
PU
Molecule needs Java 1.4 Structure


[1-44]:
1a12a_PU9_1-44
CI=2.09


[45-71]:
1a12a_PU9_45-71
CI=3.22


[72-96]:
1a12a_PU9_72-96
CI=1.20


[97-124]:
1a12a_PU9_97-124
CI=2.74


[125-140]:
1a12a_PU9_125-140
CI=1.84


[141-171]:
1a12a_PU9_141-171
CI=1.54


[172-209]:
1a12a_PU9_172-209
CI=2.35


[210-239]:
1a12a_PU9_210-239
CI=1.97


[240-272]:
1a12a_PU9_240-272
CI=3.46


[273-293]:
1a12a_PU9_273-293
CI=2.15


[294-323]:
1a12a_PU9_294-323
CI=2.90


[324-344]:
1a12a_PU9_324-344
CI=2.33


[345-372]:
1a12a_PU9_345-372
CI=3.92


[373-401 ]:
1a12a_PU9_373-401
CI=2.04


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-21]:
1a12a_PU_1-21
CI=0.00


[22-44]:
1a12a_PU_22-44
CI=1.54


[45-71]:
1a12a_PU_45-71
CI=3.22


[72-96]:
1a12a_PU_72-96
CI=1.20


[97-124]:
1a12a_PU_97-124
CI=2.74


[125-140]:
1a12a_PU_125-140
CI=1.84


[141-171]:
1a12a_PU_141-171
CI=1.54


[172-209]:
1a12a_PU_172-209
CI=2.35


[210-239]:
1a12a_PU_210-239
CI=1.97


[240-272]:
1a12a_PU_240-272
CI=3.46


[273-293]:
1a12a_PU_273-293
CI=2.15


[294-323]:
1a12a_PU_294-323
CI=2.90


[324-344]:
1a12a_PU_324-344
CI=2.33


[345-372]:
1a12a_PU_345-372
CI=3.92


[373-401 ]:
1a12a_PU_373-401
CI=2.04