Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-47]:
1a1x0_PU0_1-47
CI=2.98


[48-63]:
1a1x0_PU0_48-63
CI=0.00


[64-106 ]:
1a1x0_PU0_64-106
CI=3.70


Level 1
PU
Molecule needs Java 1.4 Structure


[1-47]:
1a1x0_PU1_1-47
CI=2.98


[48-63]:
1a1x0_PU1_48-63
CI=0.00


[64-84]:
1a1x0_PU1_64-84
CI=3.11


[85-106 ]:
1a1x0_PU1_85-106
CI=2.15


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-25]:
1a1x0_PU_1-25
CI=1.36


[26-47]:
1a1x0_PU_26-47
CI=2.83


[48-63]:
1a1x0_PU_48-63
CI=0.00


[64-84]:
1a1x0_PU_64-84
CI=3.11


[85-106 ]:
1a1x0_PU_85-106
CI=2.15