Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-18]:
1a34a_PU0_1-18
CI=0.00


[19-147 ]:
1a34a_PU0_19-147
CI=5.22


Level 1
PU
Molecule needs Java 1.4 Structure


[1-18]:
1a34a_PU1_1-18
CI=0.00


[19-67]:
1a34a_PU1_19-67
CI=0.65


[68-112]:
1a34a_PU1_68-112
CI=3.79


[113-147 ]:
1a34a_PU1_113-147
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-18]:
1a34a_PU2_1-18
CI=0.00


[19-47]:
1a34a_PU2_19-47
CI=0.19


[48-67]:
1a34a_PU2_48-67
CI=0.74


[68-112]:
1a34a_PU2_68-112
CI=3.79


[113-147 ]:
1a34a_PU2_113-147
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-18]:
1a34a_PU_1-18
CI=0.00


[19-47]:
1a34a_PU_19-47
CI=0.19


[48-67]:
1a34a_PU_48-67
CI=0.74


[68-95]:
1a34a_PU_68-95
CI=1.21


[96-112]:
1a34a_PU_96-112
CI=1.51


[113-147 ]:
1a34a_PU_113-147
CI=0.00