Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1a4ia_PU0_1-16
CI=0.00


[17-122]:
1a4ia_PU0_17-122
CI=3.08


[123-285 ]:
1a4ia_PU0_123-285
CI=4.72


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1a4ia_PU1_1-16
CI=0.00


[17-34]:
1a4ia_PU1_17-34
CI=0.31


[35-122]:
1a4ia_PU1_35-122
CI=3.38


[123-285 ]:
1a4ia_PU1_123-285
CI=4.72


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1a4ia_PU2_1-16
CI=0.00


[17-34]:
1a4ia_PU2_17-34
CI=0.31


[35-122]:
1a4ia_PU2_35-122
CI=3.38


[123-146]:
1a4ia_PU2_123-146
CI=2.02


[147-268]:
1a4ia_PU2_147-268
CI=5.10


[269-285 ]:
1a4ia_PU2_269-285
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-16]:
1a4ia_PU3_1-16
CI=0.00


[17-34]:
1a4ia_PU3_17-34
CI=0.31


[35-122]:
1a4ia_PU3_35-122
CI=3.38


[123-146]:
1a4ia_PU3_123-146
CI=2.02


[147-199]:
1a4ia_PU3_147-199
CI=2.75


[200-268]:
1a4ia_PU3_200-268
CI=4.78


[269-285 ]:
1a4ia_PU3_269-285
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-16]:
1a4ia_PU4_1-16
CI=0.00


[17-34]:
1a4ia_PU4_17-34
CI=0.31


[35-122]:
1a4ia_PU4_35-122
CI=3.38


[123-146]:
1a4ia_PU4_123-146
CI=2.02


[147-163]:
1a4ia_PU4_147-163
CI=0.21


[164-199]:
1a4ia_PU4_164-199
CI=2.80


[200-268]:
1a4ia_PU4_200-268
CI=4.78


[269-285 ]:
1a4ia_PU4_269-285
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-16]:
1a4ia_PU5_1-16
CI=0.00


[17-34]:
1a4ia_PU5_17-34
CI=0.31


[35-50]:
1a4ia_PU5_35-50
CI=0.00


[51-70]:
1a4ia_PU5_51-70
CI=0.46


[71-122]:
1a4ia_PU5_71-122
CI=1.86


[123-146]:
1a4ia_PU5_123-146
CI=2.02


[147-163]:
1a4ia_PU5_147-163
CI=0.21


[164-199]:
1a4ia_PU5_164-199
CI=2.80


[200-268]:
1a4ia_PU5_200-268
CI=4.78


[269-285 ]:
1a4ia_PU5_269-285
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-16]:
1a4ia_PU6_1-16
CI=0.00


[17-34]:
1a4ia_PU6_17-34
CI=0.31


[35-50]:
1a4ia_PU6_35-50
CI=0.00


[51-70]:
1a4ia_PU6_51-70
CI=0.46


[71-93]:
1a4ia_PU6_71-93
CI=0.24


[94-122]:
1a4ia_PU6_94-122
CI=1.03


[123-146]:
1a4ia_PU6_123-146
CI=2.02


[147-163]:
1a4ia_PU6_147-163
CI=0.21


[164-199]:
1a4ia_PU6_164-199
CI=2.80


[200-268]:
1a4ia_PU6_200-268
CI=4.78


[269-285 ]:
1a4ia_PU6_269-285
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-16]:
1a4ia_PU7_1-16
CI=0.00


[17-34]:
1a4ia_PU7_17-34
CI=0.31


[35-50]:
1a4ia_PU7_35-50
CI=0.00


[51-70]:
1a4ia_PU7_51-70
CI=0.46


[71-93]:
1a4ia_PU7_71-93
CI=0.24


[94-122]:
1a4ia_PU7_94-122
CI=1.03


[123-146]:
1a4ia_PU7_123-146
CI=2.02


[147-163]:
1a4ia_PU7_147-163
CI=0.21


[164-199]:
1a4ia_PU7_164-199
CI=2.80


[200-233]:
1a4ia_PU7_200-233
CI=2.56


[234-268]:
1a4ia_PU7_234-268
CI=2.00


[269-285 ]:
1a4ia_PU7_269-285
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-16]:
1a4ia_PU8_1-16
CI=0.00


[17-34]:
1a4ia_PU8_17-34
CI=0.31


[35-50]:
1a4ia_PU8_35-50
CI=0.00


[51-70]:
1a4ia_PU8_51-70
CI=0.46


[71-93]:
1a4ia_PU8_71-93
CI=0.24


[94-122]:
1a4ia_PU8_94-122
CI=1.03


[123-146]:
1a4ia_PU8_123-146
CI=2.02


[147-163]:
1a4ia_PU8_147-163
CI=0.21


[164-199]:
1a4ia_PU8_164-199
CI=2.80


[200-233]:
1a4ia_PU8_200-233
CI=2.56


[234-252]:
1a4ia_PU8_234-252
CI=1.08


[253-268]:
1a4ia_PU8_253-268
CI=0.11


[269-285 ]:
1a4ia_PU8_269-285
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-16]:
1a4ia_PU9_1-16
CI=0.00


[17-34]:
1a4ia_PU9_17-34
CI=0.31


[35-50]:
1a4ia_PU9_35-50
CI=0.00


[51-70]:
1a4ia_PU9_51-70
CI=0.46


[71-93]:
1a4ia_PU9_71-93
CI=0.24


[94-122]:
1a4ia_PU9_94-122
CI=1.03


[123-146]:
1a4ia_PU9_123-146
CI=2.02


[147-163]:
1a4ia_PU9_147-163
CI=0.21


[164-181]:
1a4ia_PU9_164-181
CI=1.32


[182-199]:
1a4ia_PU9_182-199
CI=0.31


[200-233]:
1a4ia_PU9_200-233
CI=2.56


[234-252]:
1a4ia_PU9_234-252
CI=1.08


[253-268]:
1a4ia_PU9_253-268
CI=0.11


[269-285 ]:
1a4ia_PU9_269-285
CI=0.00


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-16]:
1a4ia_PU_1-16
CI=0.00


[17-34]:
1a4ia_PU_17-34
CI=0.31


[35-50]:
1a4ia_PU_35-50
CI=0.00


[51-70]:
1a4ia_PU_51-70
CI=0.46


[71-93]:
1a4ia_PU_71-93
CI=0.24


[94-122]:
1a4ia_PU_94-122
CI=1.03


[123-146]:
1a4ia_PU_123-146
CI=2.02


[147-163]:
1a4ia_PU_147-163
CI=0.21


[164-181]:
1a4ia_PU_164-181
CI=1.32


[182-199]:
1a4ia_PU_182-199
CI=0.31


[200-216]:
1a4ia_PU_200-216
CI=0.11


[217-233]:
1a4ia_PU_217-233
CI=0.10


[234-252]:
1a4ia_PU_234-252
CI=1.08


[253-268]:
1a4ia_PU_253-268
CI=0.11


[269-285 ]:
1a4ia_PU_269-285
CI=0.00