Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-46]:
1a620_PU0_1-46
CI=1.44


[47-122 ]:
1a620_PU0_47-122
CI=4.80


Level 1
PU
Molecule needs Java 1.4 Structure


[1-46]:
1a620_PU1_1-46
CI=1.44


[47-93]:
1a620_PU1_47-93
CI=3.66


[94-122 ]:
1a620_PU1_94-122
CI=2.75


Level 2
PU
Molecule needs Java 1.4 Structure


[1-28]:
1a620_PU2_1-28
CI=0.86


[29-46]:
1a620_PU2_29-46
CI=0.41


[47-93]:
1a620_PU2_47-93
CI=3.66


[94-122 ]:
1a620_PU2_94-122
CI=2.75


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-28]:
1a620_PU_1-28
CI=0.86


[29-46]:
1a620_PU_29-46
CI=0.41


[47-76]:
1a620_PU_47-76
CI=2.84


[77-93]:
1a620_PU_77-93
CI=0.22


[94-122 ]:
1a620_PU_94-122
CI=2.75