Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-19]:
1a6m0_PU0_1-19
CI=0.00


[20-71]:
1a6m0_PU0_20-71
CI=1.71


[72-151 ]:
1a6m0_PU0_72-151
CI=1.15


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1a6m0_PU1_1-19
CI=0.00


[20-71]:
1a6m0_PU1_20-71
CI=1.71


[72-108]:
1a6m0_PU1_72-108
CI=0.36


[109-132]:
1a6m0_PU1_109-132
CI=0.62


[133-151 ]:
1a6m0_PU1_133-151
CI=0.18


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1a6m0_PU2_1-19
CI=0.00


[20-71]:
1a6m0_PU2_20-71
CI=1.71


[72-88]:
1a6m0_PU2_72-88
CI=0.53


[89-108]:
1a6m0_PU2_89-108
CI=0.19


[109-132]:
1a6m0_PU2_109-132
CI=0.62


[133-151 ]:
1a6m0_PU2_133-151
CI=0.18


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-19]:
1a6m0_PU_1-19
CI=0.00


[20-42]:
1a6m0_PU_20-42
CI=0.48


[43-71]:
1a6m0_PU_43-71
CI=0.44


[72-88]:
1a6m0_PU_72-88
CI=0.53


[89-108]:
1a6m0_PU_89-108
CI=0.19


[109-132]:
1a6m0_PU_109-132
CI=0.62


[133-151 ]:
1a6m0_PU_133-151
CI=0.18