Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-28]:
1a78a_PU0_1-28
CI=0.06


[29-78]:
1a78a_PU0_29-78
CI=4.98


[79-134 ]:
1a78a_PU0_79-134
CI=1.92


Level 1
PU
Molecule needs Java 1.4 Structure


[1-28]:
1a78a_PU1_1-28
CI=0.06


[29-78]:
1a78a_PU1_29-78
CI=4.98


[79-116]:
1a78a_PU1_79-116
CI=2.72


[117-134 ]:
1a78a_PU1_117-134
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-28]:
1a78a_PU2_1-28
CI=0.06


[29-46]:
1a78a_PU2_29-46
CI=2.08


[47-78]:
1a78a_PU2_47-78
CI=3.05


[79-116]:
1a78a_PU2_79-116
CI=2.72


[117-134 ]:
1a78a_PU2_117-134
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-28]:
1a78a_PU_1-28
CI=0.06


[29-46]:
1a78a_PU_29-46
CI=2.08


[47-78]:
1a78a_PU_47-78
CI=3.05


[79-100]:
1a78a_PU_79-100
CI=1.28


[101-116]:
1a78a_PU_101-116
CI=0.00


[117-134 ]:
1a78a_PU_117-134
CI=0.00