Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-90]:
1a8e0_PU0_1-90
CI=2.77


[91-244]:
1a8e0_PU0_91-244
CI=4.70


[245-329 ]:
1a8e0_PU0_245-329
CI=1.24


Level 1
PU
Molecule needs Java 1.4 Structure


[1-90]:
1a8e0_PU1_1-90
CI=2.77


[91-244]:
1a8e0_PU1_91-244
CI=4.70


[245-303]:
1a8e0_PU1_245-303
CI=1.62


[304-329 ]:
1a8e0_PU1_304-329
CI=0.07


Level 2
PU
Molecule needs Java 1.4 Structure


[1-59]:
1a8e0_PU2_1-59
CI=3.46


[60-90]:
1a8e0_PU2_60-90
CI=0.80


[91-244]:
1a8e0_PU2_91-244
CI=4.70


[245-303]:
1a8e0_PU2_245-303
CI=1.62


[304-329 ]:
1a8e0_PU2_304-329
CI=0.07


Level 3
PU
Molecule needs Java 1.4 Structure


[1-59]:
1a8e0_PU3_1-59
CI=3.46


[60-90]:
1a8e0_PU3_60-90
CI=0.80


[91-109]:
1a8e0_PU3_91-109
CI=0.00


[110-203]:
1a8e0_PU3_110-203
CI=4.60


[204-244]:
1a8e0_PU3_204-244
CI=1.72


[245-303]:
1a8e0_PU3_245-303
CI=1.62


[304-329 ]:
1a8e0_PU3_304-329
CI=0.07


Level 4
PU
Molecule needs Java 1.4 Structure


[1-59]:
1a8e0_PU4_1-59
CI=3.46


[60-90]:
1a8e0_PU4_60-90
CI=0.80


[91-109]:
1a8e0_PU4_91-109
CI=0.00


[110-203]:
1a8e0_PU4_110-203
CI=4.60


[204-244]:
1a8e0_PU4_204-244
CI=1.72


[245-264]:
1a8e0_PU4_245-264
CI=0.27


[265-303]:
1a8e0_PU4_265-303
CI=2.10


[304-329 ]:
1a8e0_PU4_304-329
CI=0.07


Level 5
PU
Molecule needs Java 1.4 Structure


[1-59]:
1a8e0_PU5_1-59
CI=3.46


[60-90]:
1a8e0_PU5_60-90
CI=0.80


[91-109]:
1a8e0_PU5_91-109
CI=0.00


[110-129]:
1a8e0_PU5_110-129
CI=1.11


[130-151]:
1a8e0_PU5_130-151
CI=1.33


[152-203]:
1a8e0_PU5_152-203
CI=3.27


[204-244]:
1a8e0_PU5_204-244
CI=1.72


[245-264]:
1a8e0_PU5_245-264
CI=0.27


[265-303]:
1a8e0_PU5_265-303
CI=2.10


[304-329 ]:
1a8e0_PU5_304-329
CI=0.07


Level 6
PU
Molecule needs Java 1.4 Structure


[1-59]:
1a8e0_PU6_1-59
CI=3.46


[60-90]:
1a8e0_PU6_60-90
CI=0.80


[91-109]:
1a8e0_PU6_91-109
CI=0.00


[110-129]:
1a8e0_PU6_110-129
CI=1.11


[130-151]:
1a8e0_PU6_130-151
CI=1.33


[152-177]:
1a8e0_PU6_152-177
CI=3.20


[178-203]:
1a8e0_PU6_178-203
CI=2.01


[204-244]:
1a8e0_PU6_204-244
CI=1.72


[245-264]:
1a8e0_PU6_245-264
CI=0.27


[265-303]:
1a8e0_PU6_265-303
CI=2.10


[304-329 ]:
1a8e0_PU6_304-329
CI=0.07


Level 7
PU
Molecule needs Java 1.4 Structure


[1-59]:
1a8e0_PU7_1-59
CI=3.46


[60-90]:
1a8e0_PU7_60-90
CI=0.80


[91-109]:
1a8e0_PU7_91-109
CI=0.00


[110-129]:
1a8e0_PU7_110-129
CI=1.11


[130-151]:
1a8e0_PU7_130-151
CI=1.33


[152-177]:
1a8e0_PU7_152-177
CI=3.20


[178-203]:
1a8e0_PU7_178-203
CI=2.01


[204-244]:
1a8e0_PU7_204-244
CI=1.72


[245-264]:
1a8e0_PU7_245-264
CI=0.27


[265-281]:
1a8e0_PU7_265-281
CI=0.87


[282-303]:
1a8e0_PU7_282-303
CI=1.35


[304-329 ]:
1a8e0_PU7_304-329
CI=0.07


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-39]:
1a8e0_PU_1-39
CI=2.70


[40-59]:
1a8e0_PU_40-59
CI=1.01


[60-90]:
1a8e0_PU_60-90
CI=0.80


[91-109]:
1a8e0_PU_91-109
CI=0.00


[110-129]:
1a8e0_PU_110-129
CI=1.11


[130-151]:
1a8e0_PU_130-151
CI=1.33


[152-177]:
1a8e0_PU_152-177
CI=3.20


[178-203]:
1a8e0_PU_178-203
CI=2.01


[204-244]:
1a8e0_PU_204-244
CI=1.72


[245-264]:
1a8e0_PU_245-264
CI=0.27


[265-281]:
1a8e0_PU_265-281
CI=0.87


[282-303]:
1a8e0_PU_282-303
CI=1.35


[304-329 ]:
1a8e0_PU_304-329
CI=0.07