Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-44]:
1aba0_PU0_1-44
CI=2.99


[45-63]:
1aba0_PU0_45-63
CI=0.38


[64-87 ]:
1aba0_PU0_64-87
CI=1.87


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-28]:
1aba0_PU_1-28
CI=0.80


[29-44]:
1aba0_PU_29-44
CI=0.81


[45-63]:
1aba0_PU_45-63
CI=0.38


[64-87 ]:
1aba0_PU_64-87
CI=1.87