Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-50]:
1ae70_PU0_1-50
CI=1.61


[51-91]:
1ae70_PU0_51-91
CI=2.23


[92-119 ]:
1ae70_PU0_92-119
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-21]:
1ae70_PU1_1-21
CI=0.62


[22-50]:
1ae70_PU1_22-50
CI=2.28


[51-91]:
1ae70_PU1_51-91
CI=2.23


[92-119 ]:
1ae70_PU1_92-119
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-21]:
1ae70_PU_1-21
CI=0.62


[22-50]:
1ae70_PU_22-50
CI=2.28


[51-67]:
1ae70_PU_51-67
CI=0.53


[68-91]:
1ae70_PU_68-91
CI=1.74


[92-119 ]:
1ae70_PU_92-119
CI=0.00