Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-80]:
1af70_PU0_1-80
CI=1.28


[81-274 ]:
1af70_PU0_81-274
CI=3.82


Level 1
PU
Molecule needs Java 1.4 Structure


[1-80]:
1af70_PU1_1-80
CI=1.28


[81-155]:
1af70_PU1_81-155
CI=3.35


[156-192]:
1af70_PU1_156-192
CI=2.18


[193-274 ]:
1af70_PU1_193-274
CI=2.64


Level 2
PU
Molecule needs Java 1.4 Structure


[1-80]:
1af70_PU2_1-80
CI=1.28


[81-155]:
1af70_PU2_81-155
CI=3.35


[156-192]:
1af70_PU2_156-192
CI=2.18


[193-211]:
1af70_PU2_193-211
CI=0.29


[212-274 ]:
1af70_PU2_212-274
CI=3.21


Level 3
PU
Molecule needs Java 1.4 Structure


[1-16]:
1af70_PU3_1-16
CI=0.00


[17-37]:
1af70_PU3_17-37
CI=0.70


[38-80]:
1af70_PU3_38-80
CI=0.92


[81-155]:
1af70_PU3_81-155
CI=3.35


[156-192]:
1af70_PU3_156-192
CI=2.18


[193-211]:
1af70_PU3_193-211
CI=0.29


[212-274 ]:
1af70_PU3_212-274
CI=3.21


Level 4
PU
Molecule needs Java 1.4 Structure


[1-16]:
1af70_PU4_1-16
CI=0.00


[17-37]:
1af70_PU4_17-37
CI=0.70


[38-59]:
1af70_PU4_38-59
CI=0.68


[60-80]:
1af70_PU4_60-80
CI=0.35


[81-155]:
1af70_PU4_81-155
CI=3.35


[156-192]:
1af70_PU4_156-192
CI=2.18


[193-211]:
1af70_PU4_193-211
CI=0.29


[212-274 ]:
1af70_PU4_212-274
CI=3.21


Level 5
PU
Molecule needs Java 1.4 Structure


[1-16]:
1af70_PU5_1-16
CI=0.00


[17-37]:
1af70_PU5_17-37
CI=0.70


[38-59]:
1af70_PU5_38-59
CI=0.68


[60-80]:
1af70_PU5_60-80
CI=0.35


[81-155]:
1af70_PU5_81-155
CI=3.35


[156-192]:
1af70_PU5_156-192
CI=2.18


[193-211]:
1af70_PU5_193-211
CI=0.29


[212-248]:
1af70_PU5_212-248
CI=1.55


[249-274 ]:
1af70_PU5_249-274
CI=2.26


Level 6
PU
Molecule needs Java 1.4 Structure


[1-16]:
1af70_PU6_1-16
CI=0.00


[17-37]:
1af70_PU6_17-37
CI=0.70


[38-59]:
1af70_PU6_38-59
CI=0.68


[60-80]:
1af70_PU6_60-80
CI=0.35


[81-104]:
1af70_PU6_81-104
CI=0.08


[105-155]:
1af70_PU6_105-155
CI=3.30


[156-192]:
1af70_PU6_156-192
CI=2.18


[193-211]:
1af70_PU6_193-211
CI=0.29


[212-248]:
1af70_PU6_212-248
CI=1.55


[249-274 ]:
1af70_PU6_249-274
CI=2.26


Level 7
PU
Molecule needs Java 1.4 Structure


[1-16]:
1af70_PU7_1-16
CI=0.00


[17-37]:
1af70_PU7_17-37
CI=0.70


[38-59]:
1af70_PU7_38-59
CI=0.68


[60-80]:
1af70_PU7_60-80
CI=0.35


[81-104]:
1af70_PU7_81-104
CI=0.08


[105-155]:
1af70_PU7_105-155
CI=3.30


[156-173]:
1af70_PU7_156-173
CI=0.10


[174-192]:
1af70_PU7_174-192
CI=2.18


[193-211]:
1af70_PU7_193-211
CI=0.29


[212-248]:
1af70_PU7_212-248
CI=1.55


[249-274 ]:
1af70_PU7_249-274
CI=2.26


Level 8
PU
Molecule needs Java 1.4 Structure


[1-16]:
1af70_PU8_1-16
CI=0.00


[17-37]:
1af70_PU8_17-37
CI=0.70


[38-59]:
1af70_PU8_38-59
CI=0.68


[60-80]:
1af70_PU8_60-80
CI=0.35


[81-104]:
1af70_PU8_81-104
CI=0.08


[105-155]:
1af70_PU8_105-155
CI=3.30


[156-173]:
1af70_PU8_156-173
CI=0.10


[174-192]:
1af70_PU8_174-192
CI=2.18


[193-211]:
1af70_PU8_193-211
CI=0.29


[212-232]:
1af70_PU8_212-232
CI=0.09


[233-248]:
1af70_PU8_233-248
CI=0.11


[249-274 ]:
1af70_PU8_249-274
CI=2.26


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-16]:
1af70_PU_1-16
CI=0.00


[17-37]:
1af70_PU_17-37
CI=0.70


[38-59]:
1af70_PU_38-59
CI=0.68


[60-80]:
1af70_PU_60-80
CI=0.35


[81-104]:
1af70_PU_81-104
CI=0.08


[105-133]:
1af70_PU_105-133
CI=0.45


[134-155]:
1af70_PU_134-155
CI=0.33


[156-173]:
1af70_PU_156-173
CI=0.10


[174-192]:
1af70_PU_174-192
CI=2.18


[193-211]:
1af70_PU_193-211
CI=0.29


[212-232]:
1af70_PU_212-232
CI=0.09


[233-248]:
1af70_PU_233-248
CI=0.11


[249-274 ]:
1af70_PU_249-274
CI=2.26