Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-35]:
1agqa_PU0_1-35
CI=3.01


[36-57]:
1agqa_PU0_36-57
CI=0.74


[58-91 ]:
1agqa_PU0_58-91
CI=3.98


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1agqa_PU1_1-19
CI=0.00


[20-35]:
1agqa_PU1_20-35
CI=0.00


[36-57]:
1agqa_PU1_36-57
CI=0.74


[58-91 ]:
1agqa_PU1_58-91
CI=3.98


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-19]:
1agqa_PU_1-19
CI=0.00


[20-35]:
1agqa_PU_20-35
CI=0.00


[36-57]:
1agqa_PU_36-57
CI=0.74


[58-75]:
1agqa_PU_58-75
CI=0.00


[76-91 ]:
1agqa_PU_76-91
CI=0.00