Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-79]:
1al30_PU0_1-79
CI=3.02


[80-179]:
1al30_PU0_80-179
CI=3.80


[180-237 ]:
1al30_PU0_180-237
CI=0.55


Level 1
PU
Molecule needs Java 1.4 Structure


[1-79]:
1al30_PU1_1-79
CI=3.02


[80-179]:
1al30_PU1_80-179
CI=3.80


[180-218]:
1al30_PU1_180-218
CI=0.58


[219-237 ]:
1al30_PU1_219-237
CI=0.10


Level 2
PU
Molecule needs Java 1.4 Structure


[1-42]:
1al30_PU2_1-42
CI=2.59


[43-79]:
1al30_PU2_43-79
CI=1.56


[80-179]:
1al30_PU2_80-179
CI=3.80


[180-218]:
1al30_PU2_180-218
CI=0.58


[219-237 ]:
1al30_PU2_219-237
CI=0.10


Level 3
PU
Molecule needs Java 1.4 Structure


[1-42]:
1al30_PU3_1-42
CI=2.59


[43-79]:
1al30_PU3_43-79
CI=1.56


[80-97]:
1al30_PU3_80-97
CI=0.71


[98-139]:
1al30_PU3_98-139
CI=2.64


[140-179]:
1al30_PU3_140-179
CI=0.56


[180-218]:
1al30_PU3_180-218
CI=0.58


[219-237 ]:
1al30_PU3_219-237
CI=0.10


Level 4
PU
Molecule needs Java 1.4 Structure


[1-42]:
1al30_PU4_1-42
CI=2.59


[43-79]:
1al30_PU4_43-79
CI=1.56


[80-97]:
1al30_PU4_80-97
CI=0.71


[98-139]:
1al30_PU4_98-139
CI=2.64


[140-160]:
1al30_PU4_140-160
CI=0.62


[161-179]:
1al30_PU4_161-179
CI=0.19


[180-218]:
1al30_PU4_180-218
CI=0.58


[219-237 ]:
1al30_PU4_219-237
CI=0.10


Level 5
PU
Molecule needs Java 1.4 Structure


[1-42]:
1al30_PU5_1-42
CI=2.59


[43-79]:
1al30_PU5_43-79
CI=1.56


[80-97]:
1al30_PU5_80-97
CI=0.71


[98-139]:
1al30_PU5_98-139
CI=2.64


[140-160]:
1al30_PU5_140-160
CI=0.62


[161-179]:
1al30_PU5_161-179
CI=0.19


[180-196]:
1al30_PU5_180-196
CI=0.00


[197-218]:
1al30_PU5_197-218
CI=0.84


[219-237 ]:
1al30_PU5_219-237
CI=0.10


Level 6
PU
Molecule needs Java 1.4 Structure


[1-42]:
1al30_PU6_1-42
CI=2.59


[43-60]:
1al30_PU6_43-60
CI=0.81


[61-79]:
1al30_PU6_61-79
CI=0.55


[80-97]:
1al30_PU6_80-97
CI=0.71


[98-139]:
1al30_PU6_98-139
CI=2.64


[140-160]:
1al30_PU6_140-160
CI=0.62


[161-179]:
1al30_PU6_161-179
CI=0.19


[180-196]:
1al30_PU6_180-196
CI=0.00


[197-218]:
1al30_PU6_197-218
CI=0.84


[219-237 ]:
1al30_PU6_219-237
CI=0.10


Level 7
PU
Molecule needs Java 1.4 Structure


[1-22]:
1al30_PU7_1-22
CI=0.08


[23-42]:
1al30_PU7_23-42
CI=0.17


[43-60]:
1al30_PU7_43-60
CI=0.81


[61-79]:
1al30_PU7_61-79
CI=0.55


[80-97]:
1al30_PU7_80-97
CI=0.71


[98-139]:
1al30_PU7_98-139
CI=2.64


[140-160]:
1al30_PU7_140-160
CI=0.62


[161-179]:
1al30_PU7_161-179
CI=0.19


[180-196]:
1al30_PU7_180-196
CI=0.00


[197-218]:
1al30_PU7_197-218
CI=0.84


[219-237 ]:
1al30_PU7_219-237
CI=0.10


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-22]:
1al30_PU_1-22
CI=0.08


[23-42]:
1al30_PU_23-42
CI=0.17


[43-60]:
1al30_PU_43-60
CI=0.81


[61-79]:
1al30_PU_61-79
CI=0.55


[80-97]:
1al30_PU_80-97
CI=0.71


[98-120]:
1al30_PU_98-120
CI=0.40


[121-139]:
1al30_PU_121-139
CI=0.29


[140-160]:
1al30_PU_140-160
CI=0.62


[161-179]:
1al30_PU_161-179
CI=0.19


[180-196]:
1al30_PU_180-196
CI=0.00


[197-218]:
1al30_PU_197-218
CI=0.84


[219-237 ]:
1al30_PU_219-237
CI=0.10