Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-81]:
1amf0_PU0_1-81
CI=2.69


[82-190]:
1amf0_PU0_82-190
CI=4.62


[191-231 ]:
1amf0_PU0_191-231
CI=0.51


Level 1
PU
Molecule needs Java 1.4 Structure


[1-81]:
1amf0_PU1_1-81
CI=2.69


[82-190]:
1amf0_PU1_82-190
CI=4.62


[191-214]:
1amf0_PU1_191-214
CI=0.32


[215-231 ]:
1amf0_PU1_215-231
CI=0.54


Level 2
PU
Molecule needs Java 1.4 Structure


[1-56]:
1amf0_PU2_1-56
CI=3.09


[57-81]:
1amf0_PU2_57-81
CI=0.44


[82-190]:
1amf0_PU2_82-190
CI=4.62


[191-214]:
1amf0_PU2_191-214
CI=0.32


[215-231 ]:
1amf0_PU2_215-231
CI=0.54


Level 3
PU
Molecule needs Java 1.4 Structure


[1-56]:
1amf0_PU3_1-56
CI=3.09


[57-81]:
1amf0_PU3_57-81
CI=0.44


[82-97]:
1amf0_PU3_82-97
CI=0.12


[98-148]:
1amf0_PU3_98-148
CI=2.21


[149-190]:
1amf0_PU3_149-190
CI=1.49


[191-214]:
1amf0_PU3_191-214
CI=0.32


[215-231 ]:
1amf0_PU3_215-231
CI=0.54


Level 4
PU
Molecule needs Java 1.4 Structure


[1-56]:
1amf0_PU4_1-56
CI=3.09


[57-81]:
1amf0_PU4_57-81
CI=0.44


[82-97]:
1amf0_PU4_82-97
CI=0.12


[98-148]:
1amf0_PU4_98-148
CI=2.21


[149-167]:
1amf0_PU4_149-167
CI=1.37


[168-190]:
1amf0_PU4_168-190
CI=0.24


[191-214]:
1amf0_PU4_191-214
CI=0.32


[215-231 ]:
1amf0_PU4_215-231
CI=0.54


Level 5
PU
Molecule needs Java 1.4 Structure


[1-34]:
1amf0_PU5_1-34
CI=2.30


[35-56]:
1amf0_PU5_35-56
CI=0.34


[57-81]:
1amf0_PU5_57-81
CI=0.44


[82-97]:
1amf0_PU5_82-97
CI=0.12


[98-148]:
1amf0_PU5_98-148
CI=2.21


[149-167]:
1amf0_PU5_149-167
CI=1.37


[168-190]:
1amf0_PU5_168-190
CI=0.24


[191-214]:
1amf0_PU5_191-214
CI=0.32


[215-231 ]:
1amf0_PU5_215-231
CI=0.54


Level 6
PU
Molecule needs Java 1.4 Structure


[1-34]:
1amf0_PU6_1-34
CI=2.30


[35-56]:
1amf0_PU6_35-56
CI=0.34


[57-81]:
1amf0_PU6_57-81
CI=0.44


[82-97]:
1amf0_PU6_82-97
CI=0.12


[98-115]:
1amf0_PU6_98-115
CI=0.10


[116-148]:
1amf0_PU6_116-148
CI=1.38


[149-167]:
1amf0_PU6_149-167
CI=1.37


[168-190]:
1amf0_PU6_168-190
CI=0.24


[191-214]:
1amf0_PU6_191-214
CI=0.32


[215-231 ]:
1amf0_PU6_215-231
CI=0.54


Level 7
PU
Molecule needs Java 1.4 Structure


[1-34]:
1amf0_PU7_1-34
CI=2.30


[35-56]:
1amf0_PU7_35-56
CI=0.34


[57-81]:
1amf0_PU7_57-81
CI=0.44


[82-97]:
1amf0_PU7_82-97
CI=0.12


[98-115]:
1amf0_PU7_98-115
CI=0.10


[116-132]:
1amf0_PU7_116-132
CI=1.20


[133-148]:
1amf0_PU7_133-148
CI=0.00


[149-167]:
1amf0_PU7_149-167
CI=1.37


[168-190]:
1amf0_PU7_168-190
CI=0.24


[191-214]:
1amf0_PU7_191-214
CI=0.32


[215-231 ]:
1amf0_PU7_215-231
CI=0.54


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-17]:
1amf0_PU_1-17
CI=0.11


[18-34]:
1amf0_PU_18-34
CI=0.96


[35-56]:
1amf0_PU_35-56
CI=0.34


[57-81]:
1amf0_PU_57-81
CI=0.44


[82-97]:
1amf0_PU_82-97
CI=0.12


[98-115]:
1amf0_PU_98-115
CI=0.10


[116-132]:
1amf0_PU_116-132
CI=1.20


[133-148]:
1amf0_PU_133-148
CI=0.00


[149-167]:
1amf0_PU_149-167
CI=1.37


[168-190]:
1amf0_PU_168-190
CI=0.24


[191-214]:
1amf0_PU_191-214
CI=0.32


[215-231 ]:
1amf0_PU_215-231
CI=0.54