Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-54]:
1amx0_PU0_1-54
CI=1.49


[55-80]:
1amx0_PU0_55-80
CI=1.51


[81-150 ]:
1amx0_PU0_81-150
CI=2.21


Level 1
PU
Molecule needs Java 1.4 Structure


[1-54]:
1amx0_PU1_1-54
CI=1.49


[55-80]:
1amx0_PU1_55-80
CI=1.51


[81-113]:
1amx0_PU1_81-113
CI=1.39


[114-150 ]:
1amx0_PU1_114-150
CI=2.74


Level 2
PU
Molecule needs Java 1.4 Structure


[1-31]:
1amx0_PU2_1-31
CI=2.28


[32-54]:
1amx0_PU2_32-54
CI=0.08


[55-80]:
1amx0_PU2_55-80
CI=1.51


[81-113]:
1amx0_PU2_81-113
CI=1.39


[114-150 ]:
1amx0_PU2_114-150
CI=2.74


Level 3
PU
Molecule needs Java 1.4 Structure


[1-31]:
1amx0_PU3_1-31
CI=2.28


[32-54]:
1amx0_PU3_32-54
CI=0.08


[55-80]:
1amx0_PU3_55-80
CI=1.51


[81-97]:
1amx0_PU3_81-97
CI=2.30


[98-113]:
1amx0_PU3_98-113
CI=0.00


[114-150 ]:
1amx0_PU3_114-150
CI=2.74


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-31]:
1amx0_PU_1-31
CI=2.28


[32-54]:
1amx0_PU_32-54
CI=0.08


[55-80]:
1amx0_PU_55-80
CI=1.51


[81-97]:
1amx0_PU_81-97
CI=2.30


[98-113]:
1amx0_PU_98-113
CI=0.00


[114-130]:
1amx0_PU_114-130
CI=0.00


[131-150 ]:
1amx0_PU_131-150
CI=0.56