Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-55]:
1aoha_PU0_1-55
CI=1.35


[56-90]:
1aoha_PU0_56-90
CI=2.55


[91-143 ]:
1aoha_PU0_91-143
CI=1.74


Level 1
PU
Molecule needs Java 1.4 Structure


[1-55]:
1aoha_PU1_1-55
CI=1.35


[56-90]:
1aoha_PU1_56-90
CI=2.55


[91-108]:
1aoha_PU1_91-108
CI=0.00


[109-143 ]:
1aoha_PU1_109-143
CI=2.45


Level 2
PU
Molecule needs Java 1.4 Structure


[1-38]:
1aoha_PU2_1-38
CI=1.55


[39-55]:
1aoha_PU2_39-55
CI=0.00


[56-90]:
1aoha_PU2_56-90
CI=2.55


[91-108]:
1aoha_PU2_91-108
CI=0.00


[109-143 ]:
1aoha_PU2_109-143
CI=2.45


Level 3
PU
Molecule needs Java 1.4 Structure


[1-38]:
1aoha_PU3_1-38
CI=1.55


[39-55]:
1aoha_PU3_39-55
CI=0.00


[56-73]:
1aoha_PU3_56-73
CI=0.31


[74-90]:
1aoha_PU3_74-90
CI=0.43


[91-108]:
1aoha_PU3_91-108
CI=0.00


[109-143 ]:
1aoha_PU3_109-143
CI=2.45


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-38]:
1aoha_PU_1-38
CI=1.55


[39-55]:
1aoha_PU_39-55
CI=0.00


[56-73]:
1aoha_PU_56-73
CI=0.31


[74-90]:
1aoha_PU_74-90
CI=0.43


[91-108]:
1aoha_PU_91-108
CI=0.00


[109-125]:
1aoha_PU_109-125
CI=0.00


[126-143 ]:
1aoha_PU_126-143
CI=0.00