Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-27]:
1aq0a_PU0_1-27
CI=0.21


[28-127]:
1aq0a_PU0_28-127
CI=3.70


[128-306 ]:
1aq0a_PU0_128-306
CI=4.24


Level 1
PU
Molecule needs Java 1.4 Structure


[1-27]:
1aq0a_PU1_1-27
CI=0.21


[28-127]:
1aq0a_PU1_28-127
CI=3.70


[128-231]:
1aq0a_PU1_128-231
CI=3.56


[232-306 ]:
1aq0a_PU1_232-306
CI=3.70


Level 2
PU
Molecule needs Java 1.4 Structure


[1-27]:
1aq0a_PU2_1-27
CI=0.21


[28-127]:
1aq0a_PU2_28-127
CI=3.70


[128-169]:
1aq0a_PU2_128-169
CI=1.54


[170-209]:
1aq0a_PU2_170-209
CI=2.19


[210-231]:
1aq0a_PU2_210-231
CI=0.66


[232-306 ]:
1aq0a_PU2_232-306
CI=3.70


Level 3
PU
Molecule needs Java 1.4 Structure


[1-27]:
1aq0a_PU3_1-27
CI=0.21


[28-127]:
1aq0a_PU3_28-127
CI=3.70


[128-169]:
1aq0a_PU3_128-169
CI=1.54


[170-209]:
1aq0a_PU3_170-209
CI=2.19


[210-231]:
1aq0a_PU3_210-231
CI=0.66


[232-253]:
1aq0a_PU3_232-253
CI=1.93


[254-273]:
1aq0a_PU3_254-273
CI=1.94


[274-306 ]:
1aq0a_PU3_274-306
CI=2.54


Level 4
PU
Molecule needs Java 1.4 Structure


[1-27]:
1aq0a_PU4_1-27
CI=0.21


[28-127]:
1aq0a_PU4_28-127
CI=3.70


[128-151]:
1aq0a_PU4_128-151
CI=1.72


[152-169]:
1aq0a_PU4_152-169
CI=0.59


[170-209]:
1aq0a_PU4_170-209
CI=2.19


[210-231]:
1aq0a_PU4_210-231
CI=0.66


[232-253]:
1aq0a_PU4_232-253
CI=1.93


[254-273]:
1aq0a_PU4_254-273
CI=1.94


[274-306 ]:
1aq0a_PU4_274-306
CI=2.54


Level 5
PU
Molecule needs Java 1.4 Structure


[1-27]:
1aq0a_PU5_1-27
CI=0.21


[28-127]:
1aq0a_PU5_28-127
CI=3.70


[128-151]:
1aq0a_PU5_128-151
CI=1.72


[152-169]:
1aq0a_PU5_152-169
CI=0.59


[170-188]:
1aq0a_PU5_170-188
CI=0.77


[189-209]:
1aq0a_PU5_189-209
CI=1.96


[210-231]:
1aq0a_PU5_210-231
CI=0.66


[232-253]:
1aq0a_PU5_232-253
CI=1.93


[254-273]:
1aq0a_PU5_254-273
CI=1.94


[274-306 ]:
1aq0a_PU5_274-306
CI=2.54


Level 6
PU
Molecule needs Java 1.4 Structure


[1-27]:
1aq0a_PU6_1-27
CI=0.21


[28-53]:
1aq0a_PU6_28-53
CI=2.11


[54-127]:
1aq0a_PU6_54-127
CI=2.62


[128-151]:
1aq0a_PU6_128-151
CI=1.72


[152-169]:
1aq0a_PU6_152-169
CI=0.59


[170-188]:
1aq0a_PU6_170-188
CI=0.77


[189-209]:
1aq0a_PU6_189-209
CI=1.96


[210-231]:
1aq0a_PU6_210-231
CI=0.66


[232-253]:
1aq0a_PU6_232-253
CI=1.93


[254-273]:
1aq0a_PU6_254-273
CI=1.94


[274-306 ]:
1aq0a_PU6_274-306
CI=2.54


Level 7
PU
Molecule needs Java 1.4 Structure


[1-27]:
1aq0a_PU7_1-27
CI=0.21


[28-53]:
1aq0a_PU7_28-53
CI=2.11


[54-82]:
1aq0a_PU7_54-82
CI=0.38


[83-127]:
1aq0a_PU7_83-127
CI=1.83


[128-151]:
1aq0a_PU7_128-151
CI=1.72


[152-169]:
1aq0a_PU7_152-169
CI=0.59


[170-188]:
1aq0a_PU7_170-188
CI=0.77


[189-209]:
1aq0a_PU7_189-209
CI=1.96


[210-231]:
1aq0a_PU7_210-231
CI=0.66


[232-253]:
1aq0a_PU7_232-253
CI=1.93


[254-273]:
1aq0a_PU7_254-273
CI=1.94


[274-306 ]:
1aq0a_PU7_274-306
CI=2.54


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-27]:
1aq0a_PU_1-27
CI=0.21


[28-53]:
1aq0a_PU_28-53
CI=2.11


[54-82]:
1aq0a_PU_54-82
CI=0.38


[83-127]:
1aq0a_PU_83-127
CI=1.83


[128-151]:
1aq0a_PU_128-151
CI=1.72


[152-169]:
1aq0a_PU_152-169
CI=0.59


[170-188]:
1aq0a_PU_170-188
CI=0.77


[189-209]:
1aq0a_PU_189-209
CI=1.96


[210-231]:
1aq0a_PU_210-231
CI=0.66


[232-253]:
1aq0a_PU_232-253
CI=1.93


[254-273]:
1aq0a_PU_254-273
CI=1.94


[274-290]:
1aq0a_PU_274-290
CI=0.98


[291-306 ]:
1aq0a_PU_291-306
CI=1.04