Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-45]:
1aqza_PU0_1-45
CI=1.96


[46-83]:
1aqza_PU0_46-83
CI=2.00


[84-142 ]:
1aqza_PU0_84-142
CI=3.37


Level 1
PU
Molecule needs Java 1.4 Structure


[1-29]:
1aqza_PU1_1-29
CI=1.78


[30-45]:
1aqza_PU1_30-45
CI=1.95


[46-83]:
1aqza_PU1_46-83
CI=2.00


[84-142 ]:
1aqza_PU1_84-142
CI=3.37


Level 2
PU
Molecule needs Java 1.4 Structure


[1-29]:
1aqza_PU2_1-29
CI=1.78


[30-45]:
1aqza_PU2_30-45
CI=1.95


[46-62]:
1aqza_PU2_46-62
CI=1.32


[63-83]:
1aqza_PU2_63-83
CI=0.62


[84-142 ]:
1aqza_PU2_84-142
CI=3.37


Level 3
PU
Molecule needs Java 1.4 Structure


[1-29]:
1aqza_PU3_1-29
CI=1.78


[30-45]:
1aqza_PU3_30-45
CI=1.95


[46-62]:
1aqza_PU3_46-62
CI=1.32


[63-83]:
1aqza_PU3_63-83
CI=0.62


[84-122]:
1aqza_PU3_84-122
CI=2.26


[123-142 ]:
1aqza_PU3_123-142
CI=1.97


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-29]:
1aqza_PU_1-29
CI=1.78


[30-45]:
1aqza_PU_30-45
CI=1.95


[46-62]:
1aqza_PU_46-62
CI=1.32


[63-83]:
1aqza_PU_63-83
CI=0.62


[84-100]:
1aqza_PU_84-100
CI=0.43


[101-122]:
1aqza_PU_101-122
CI=0.09


[123-142 ]:
1aqza_PU_123-142
CI=1.97